Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0323 | ATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACCGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA | 906 | 47.79 | MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3604617 | 3607822 | - | CaPI482276_01g003230.1 | Cam01g0323 | 117405 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0323 | 301 | SMART | KNOX2_2 | 93 | 148 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam01g0323 | 301 | SMART | HOX_1 | 226 | 291 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0323 | 301 | Pfam | KNOX2 domain | 97 | 147 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam01g0323 | 301 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 225 | 286 | - | - | |
Cam01g0323 | 301 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 35 | 287 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam01g0323 | 301 | ProSiteProfiles | 'Homeobox' domain profile. | 224 | 287 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0323 | 301 | SUPERFAMILY | Homeodomain-like | 226 | 291 | IPR009057 | - | |
Cam01g0323 | 301 | SMART | KNOX1_2 | 33 | 77 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam01g0323 | 301 | CDD | homeodomain | 227 | 288 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0323 | 301 | Pfam | Homeobox KN domain | 244 | 283 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cam01g0323 | 301 | Gene3D | - | 223 | 297 | - | - | |
Cam01g0323 | 301 | ProSiteProfiles | ELK domain profile. | 204 | 224 | IPR005539 | GO:0003677(InterPro) | |
Cam01g0323 | 301 | Pfam | KNOX1 domain | 35 | 76 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0323 | Cam-Chr1:3604617 | Cam08g1818 | Cam-Chr8:24258528 | 2.10E-103 | dispersed | |
Cam01g0323 | Cam-Chr1:3604617 | Cam05g1822 | Cam-Chr5:27122722 | 2.30E-105 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51195 | PF03791 | KNOX2 | 7.60E-18 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0323 | - | - | - | 0.0 |