Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0323 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACCGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA 906 47.79 MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3604617 3607822 - CaPI482276_01g003230.1 Cam01g0323 117405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0323 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam01g0323 301 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cam01g0323 301 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam01g0323 301 FunFam homeobox protein knotted-1-like 3 isoform X1 225 286 - -
Cam01g0323 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 287 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam01g0323 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cam01g0323 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Cam01g0323 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam01g0323 301 CDD homeodomain 227 288 IPR001356 GO:0003677(InterPro)
Cam01g0323 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g0323 301 Gene3D - 223 297 - -
Cam01g0323 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cam01g0323 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0323 Cam-Chr1:3604617 Cam08g1818 Cam-Chr8:24258528 2.10E-103 dispersed
Cam01g0323 Cam-Chr1:3604617 Cam05g1822 Cam-Chr5:27122722 2.30E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51195 PF03791 KNOX2 7.60E-18 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0323 - - - 0.0