Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0330 ATGGCTTGTTCTTCTTTAGGCTTTAACTTCTTCTTGGTGGCTTTGTTTTTGGCCATCTTCACCAGATCAACGCTCGCTGTGTTCCGACCAAGCTCATGGAACCTCGCTCATGCCACCTTTTATGGTGATGAAACTGCCTCCGAGACCATGGGTGGAGCTTGTGGGTACGGAAACTTGTTTACAAACGGGTATGGAACTGATACAGCGGCGTTGAGCTCAACACTGTTCAACAATGGCTATGCTTGTGGGACTTGCTTTCAAATCAAATGTGTGCAGTCCACGGCGTGCTACAAGAATGTGCAATTCACCACCGTGACGGCGACCAACTTGTGCCCGCCAAATTGGTCAGAGGACTCCAATGCCGGCGGCTGGTGCAATCCACCAAGAGTTCACTTTGACATGGCCAAGCCTGCCTTTATGAAGATCGCCTGGTGGAAGGCCGGAATTATTCCCGTTCAGTACCGCAGGGTTCCATGTGTAAAAAAAGGAGGAGTTCGATTGAGCTTGCAAGGAAATGGATATTGGCTATTGGTGTACGTGATGAACGTAGGAGGAGGAGGTGATGTATCTTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAATTGGGGAGCTTCATATCAAGCTTTTGCTTCATTGGGTGGTCAAGGCCTCTCTTTTAGAATCACTTCTTACACAACCAGAGAGACCCTTACTTTATGGAATGTCATTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATCTCAACTTCCATTGA 780 46.92 MACSSLGFNFFLVALFLAIFTRSTLAVFRPSSWNLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSTACYKNVQFTTVTATNLCPPNWSEDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQYRRVPCVKKGGVRLSLQGNGYWLLVYVMNVGGGGDVSSMAVKGSKTGWITMSHNWGASYQAFASLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNSNLNFH 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3691324 3693500 - CaPI482276_01g003300.1 Cam01g0330 117412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0330 259 Gene3D - 164 259 IPR036749 -
Cam01g0330 259 Pfam Expansin C-terminal domain 165 243 IPR007117 -
Cam01g0330 259 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
Cam01g0330 259 CDD DPBB_EXPA_N 33 159 - -
Cam01g0330 259 PANTHER EXPANSIN-A15 15 254 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Cam01g0330 259 Gene3D - 18 159 IPR036908 -
Cam01g0330 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Cam01g0330 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cam01g0330 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cam01g0330 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cam01g0330 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cam01g0330 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cam01g0330 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cam01g0330 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Cam01g0330 259 SMART dpbb_1 68 154 IPR007112 -
Cam01g0330 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cam01g0330 259 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0330 Cam-Chr1:3691324 Cam07g0331 Cam-Chr7:4460313 3.10E-74 dispersed
Cam01g0330 Cam-Chr1:3691324 Cam10g0338 Cam-Chr10:5511833 3.90E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0330 - - - 0.0