Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0339 ATGACGCACTTTCTTCAAACCTCCATTTCCCTTGGTTCGTTGCGCGAAAGGAATGCCATCGATTCATCGTTGTTCAAACAATGGCTGATGAACTTGCAAAGCGAGAGGGGGATTTTAGCCAATGGAGCTATGTCTCTGAAGCGCGTTCTTATTCAGGGAGTCGATATGTTCGGAAGCAGAATTGGGTTTCTCAAATTTAAAGCCGACATCTACGATAAGCAAACCGGGAAGAAGAATGAAGCCATATACGTTGGTATTGTCTTTGCAAGAGGACCTGCTGTTGCTGTGCTTATCCTTTTGAGTTGCGAAGGAGAAACTTATGCTGTCCTGACCGAGCAGGTTAGAGTTCCTGTTGGGAAGCATATGTTGGAATTGCCTGCTGGTATGTTGGATGATGATGAGGGGGATTTTGTTGGCACTGCAGTTCGTGAGGTTGAAGAAGAAATTGGCATTCAATTAAAGGTTGAGGACATGGTTGATCTTACTGGCTTCTTGGACCCATCGACTGGATGCAGAGTCTTTCTTTCTGCTGGAGGATGTGATGAGGGAATCGGTCTCTTCTTGTATCGAGGATCTGCAAGTAAAGAGACAATTGCAGAGCTGCAAGGAAAGGAAACTGGACTCAGGGATCATGGCGAGCTGATTAAGGTTCATGTTGTTCCCTACAAAAAACTGTGGCGTGTTACAGCTGATTCGATGACTCTCATGGCCATTGCACTGTATGAAATGGCTCAGAAGGAAGGGCTTTTGCCTTCTTTGAAACCATGCTAG 771 45.53 MTHFLQTSISLGSLRERNAIDSSLFKQWLMNLQSERGILANGAMSLKRVLIQGVDMFGSRIGFLKFKADIYDKQTGKKNEAIYVGIVFARGPAVAVLILLSCEGETYAVLTEQVRVPVGKHMLELPAGMLDDDEGDFVGTAVREVEEEIGIQLKVEDMVDLTGFLDPSTGCRVFLSAGGCDEGIGLFLYRGSASKETIAELQGKETGLRDHGELIKVHVVPYKKLWRVTADSMTLMAIALYEMAQKEGLLPSLKPC 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3803999 3806579 - CaPI482276_01g003390.1 Cam01g0339 117421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0339 256 Pfam NUDIX domain 90 225 IPR000086 -
Cam01g0339 256 SUPERFAMILY Nudix 63 242 IPR015797 -
Cam01g0339 256 CDD ADPRase_NUDT5 90 243 - -
Cam01g0339 256 FunFam Nudix hydrolase 14 chloroplastic 56 247 - -
Cam01g0339 256 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 40 251 - GO:0006753(PANTHER)|GO:0019693(PANTHER)|GO:0080041(PANTHER)|GO:0080042(PANTHER)
Cam01g0339 256 ProSiteProfiles Nudix hydrolase domain profile. 89 244 IPR000086 -
Cam01g0339 256 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 58 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0339 K18447 - - csv:101208090 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0338 Cam-Chr1:3798472 Cam01g0339 Cam-Chr1:3803999 6.10E-118 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g439 . . . . . . . . . . . Cma15g01181 . . . . . . . . . . . . . . . . . . . Cone8ag0345 Cone12ag0339 . . . . . . . Blo19g00291 . . Bpe08g01456 . . . . . Cmo15g01243 . . . . . Cpe13g00192 . . . . . . . Cla01g00327 Cam01g0339 Cec01g0333 Cco01g0346 Clacu01g0343 Cmu01g0323 Cre09g2187 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006179 1 1 1 0 1 2 1 2 2 1 1 2 1 1 1 1 2 2 1 2 1 3 1 1 1 1 1 1 1 1 38