Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam01g0352 | ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCCAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTCCGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGCTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA | 912 | 53.95 | MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3904616 | 3905527 | - | CaPI482276_01g003520.1 | Cam01g0352 | 117434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam01g0352 | 303 | CDD | DUF296 | 102 | 168 | IPR005175 | - | |
| Cam01g0352 | 303 | MobiDBLite | consensus disorder prediction | 244 | 270 | - | - | |
| Cam01g0352 | 303 | MobiDBLite | consensus disorder prediction | 223 | 283 | - | - | |
| Cam01g0352 | 303 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Cam01g0352 | 303 | ProSiteProfiles | PPC domain profile profile. | 98 | 237 | IPR005175 | - | |
| Cam01g0352 | 303 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 98 | 229 | - | - | |
| Cam01g0352 | 303 | FunFam | AT-hook motif nuclear-localized protein | 101 | 228 | - | - | |
| Cam01g0352 | 303 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
| Cam01g0352 | 303 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 102 | 214 | IPR005175 | - | |
| Cam01g0352 | 303 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
| Cam01g0352 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 30 | 303 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
| Cam01g0352 | 303 | PIRSF | ESCAROLA | 12 | 303 | IPR014476 | GO:0003680(InterPro) | |
| Cam01g0352 | 303 | Gene3D | - | 101 | 229 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g0352 | Cam-Chr1:3904616 | Cam05g0298 | Cam-Chr5:2841698 | 4.50E-69 | dispersed | |
| Cam01g0352 | Cam-Chr1:3904616 | Cam01g0355 | Cam-Chr1:3974678 | 9.50E-19 | proximal | |
| Cam06g1583 | Cam-Chr6:27312326 | Cam01g0352 | Cam-Chr1:3904616 | 7.60E-63 | transposed | |
| Cam07g0559 | Cam-Chr7:8407465 | Cam01g0352 | Cam-Chr1:3904616 | 3.00E-16 | transposed | |
| Cam01g0352 | Cam-Chr1:3904616 | Cam05g0248 | Cam-Chr5:2445376 | 4.50E-69 | wgd | |
| Cam01g0352 | Cam-Chr1:3904616 | Cam06g0196 | Cam-Chr6:3789490 | 9.40E-75 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam01g0352 | - | - | - | 0.0 |