Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam01g0362 | ATGGCATCATCCCTCTCGAATTCTGTTCAATCGGGTCGGATTAGGATTCTGAAAGATGGAACCGGTTCTGTTGGTCCGGTAGTTTATTGGATGTTCAGAGATCAACGGGTGAAAGACAATTGGGCTTTGATACACGCTGTTGATGAAGCCAACAGAGCCAATGTCCCTGTTGCTGTTGCCTTCAATTTGTTCGATCGATTTTTGGGGGCGAAATCTCGGCAATTAGGGTTTATGCTTAGGGGTCTGCAACAACTTCAACATGATCTTCAAGAAATGCTTCAAGTACCTTTCTTCTTGTTTCAGGGGGAAGCTGAACAGACTATACCAAATTTCATTAGAGAATGTGGGGCTTCACTTCTAGTCACAGACTTCTCACCCTTAAGAGAAGTTCGGAAGTGTAAAGAGGAAATTTGTAAGAGGGTAGAGGAATCAGTTAAAGTACATGAAGTTGATGCCCACAATGTGGTACCCATTTGGGTTGCATCCGAGAAATTGGAGTACAGTGCAAAAACTTTAAGGGGCAAGATAAATAAAAAGCTCCCGGATTACCTTATTGATTTCCCTCCTGTGGTCATACCAACTAGAAAATGGCTTTCCTCTGATAAGTTTATTGATTGGGATAAACTTATTGATGATAACTTGAGGAAAGGAGCAGATGTTCCTGAAATTGAATGGTGTAAACCAGGGGAAAAGGCTGCACTGGAAGTATTGATGGGTAGTAAAGATGGGTTTTTGACTAAGAGATTGAAGGGCTATGCAATAGACCGGAACAATCCATTGAAACCTAAGGGGCTCTCTGGCCTCTCCCCATATTTGCATTTTGGCCAAATATCTGCACAACGTTGTGCCTTGGAAGCACGCAATGTTCGAAAACTCAATCCACAGGCAGTTGATGTTTTTCTTGAGGAGTTGATTGTTAGAAGGGAACTTGCTGATAATTACTGCTACTACCAACCTCACTATGATTCACTGCTTGGGGCTTGGGAATGGGCACGTAAAACCTTGATGGACCATGCTTCCGATAAGCGAGAACATATTTACACGAGGGAGCAACTGGAGAAGGCGCAAACTGCTGACCCGCTCTGGAATGCTTCTCAGTTGGAGATGGTCTTCCATGGAAAGATGCATGGTTTTATGAGGATGTACTGGGCCAAAAAGATTTTGGAGTGGACAAGAGGACCTGAGGAAGCCCTTGAAATTTGCATATACTTGAATGACAAGTATGAAATCGATGGGAGGGATCCAAATGGATACGTTGGGTGCATGTGGTCAATCTGTGGCGTTCACGACCAGGGTTGGAAAGAGCGACCAGTATTTGGGAAGATACGGTACATGAACTTCGCTGGATGCAAGAGGAAATTTGATGTGGATGGCTACATTGCCTATGTCAAGAGACTTGTGGGTGAAATCAAGAAAAGAAAACCAGAGGAAGCTCTGCATGATAGAAAGCCAAAGGGAATTCGTTGCTAG | 1470 | 43.74 | MASSLSNSVQSGRIRILKDGTGSVGPVVYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNLFDRFLGAKSRQLGFMLRGLQQLQHDLQEMLQVPFFLFQGEAEQTIPNFIRECGASLLVTDFSPLREVRKCKEEICKRVEESVKVHEVDAHNVVPIWVASEKLEYSAKTLRGKINKKLPDYLIDFPPVVIPTRKWLSSDKFIDWDKLIDDNLRKGADVPEIEWCKPGEKAALEVLMGSKDGFLTKRLKGYAIDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARNVRKLNPQAVDVFLEELIVRRELADNYCYYQPHYDSLLGAWEWARKTLMDHASDKREHIYTREQLEKAQTADPLWNASQLEMVFHGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNFAGCKRKFDVDGYIAYVKRLVGEIKKRKPEEALHDRKPKGIRC | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 4058800 | 4061891 | + | CaPI482276_01g003620.1 | Cam01g0362 | 117444 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam01g0362 | 489 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 25 | 158 | IPR006050 | - | |
| Cam01g0362 | 489 | Gene3D | - | 153 | 323 | - | - | |
| Cam01g0362 | 489 | Pfam | DNA photolyase | 27 | 188 | IPR006050 | - | |
| Cam01g0362 | 489 | FunFam | Deoxyribodipyrimidine photolyase | 8 | 152 | - | - | |
| Cam01g0362 | 489 | Gene3D | HUPs | 7 | 152 | IPR014729 | - | |
| Cam01g0362 | 489 | FunFam | Deoxyribodipyrimidine photolyase | 324 | 471 | - | - | |
| Cam01g0362 | 489 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 214 | 476 | IPR036134 | - | |
| Cam01g0362 | 489 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 324 | 474 | - | - | |
| Cam01g0362 | 489 | NCBIfam | deoxyribodipyrimidine photo-lyase | 8 | 462 | IPR008148 | GO:0003904(InterPro)|GO:0006281(InterPro) | |
| Cam01g0362 | 489 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 26 | 212 | IPR036155 | - | |
| Cam01g0362 | 489 | FunFam | Deoxyribodipyrimidine photolyase | 153 | 323 | - | - | |
| Cam01g0362 | 489 | ProSitePatterns | DNA photolyases class 2 signature 2. | 427 | 446 | IPR032673 | - | |
| Cam01g0362 | 489 | PANTHER | DEOXYRIBODIPYRIMIDINE PHOTOLYASE | 7 | 483 | IPR052219 | GO:0000719(PANTHER)|GO:0003904(PANTHER) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam01g0362 | K01669 | - | - | csv:101211446 | 972.23 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi2g476 | . | . | . | . | . | . | . | Bma14g00015 | . | . | . | . | Car02g01268 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone6ag0716 | Cone9ag0717 | . | Csa05g00371 | . | . | Blo03g00391 | . | . | . | . | Bpe11g00249 | . | . | . | Cmo02g01547 | . | . | . | . | . | . | Cpe13g00206 | Bhi12g00370 | . | . | Lac11g2214 | Hepe06g1631 | . | Lcy12g1755 | Cla01g00346 | Cam01g0362 | Cec01g0358 | Cco01g0371 | Clacu01g0365 | Cmu01g0345 | Cre09g2164 | Lsi09g00373 | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012469 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 29 |