Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0388 | ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA | 729 | 44.99 | MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4275557 | 4278084 | - | CaPI482276_01g003880.1 | Cam01g0388 | 117470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0388 | 242 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cam01g0388 | 242 | SUPERFAMILY | HMG-box | 148 | 196 | IPR036910 | - | |
Cam01g0388 | 242 | CDD | HMG-box_SF | 157 | 193 | - | - | |
Cam01g0388 | 242 | PANTHER | PROTEIN YABBY 6-RELATED | 39 | 212 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
Cam01g0388 | 242 | Pfam | YABBY protein | 39 | 203 | IPR006780 | GO:0007275(InterPro) | |
Cam01g0388 | 242 | Gene3D | High mobility group box domain | 146 | 211 | IPR036910 | - | |
Cam01g0388 | 242 | FunFam | Axial regulator YABBY | 148 | 219 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0388 | Cam-Chr1:4275557 | Cam02g2328 | Cam-Chr2:35847031 | 5.20E-44 | dispersed | |
Cam05g2558 | Cam-Chr5:33354812 | Cam01g0388 | Cam-Chr1:4275557 | 1.30E-22 | transposed | |
Cam01g0388 | Cam-Chr1:4275557 | Cam10g0296 | Cam-Chr10:5098968 | 1.70E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51204 | PF04690 | YABBY | 2.90E-70 | CL0114 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0388 | K25796 | - | csv:101214748 | 431.409 |