Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0388 ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 729 44.99 MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4275557 4278084 - CaPI482276_01g003880.1 Cam01g0388 117470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0388 242 MobiDBLite consensus disorder prediction 1 31 - -
Cam01g0388 242 SUPERFAMILY HMG-box 148 196 IPR036910 -
Cam01g0388 242 CDD HMG-box_SF 157 193 - -
Cam01g0388 242 PANTHER PROTEIN YABBY 6-RELATED 39 212 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cam01g0388 242 Pfam YABBY protein 39 203 IPR006780 GO:0007275(InterPro)
Cam01g0388 242 Gene3D High mobility group box domain 146 211 IPR036910 -
Cam01g0388 242 FunFam Axial regulator YABBY 148 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0388 Cam-Chr1:4275557 Cam02g2328 Cam-Chr2:35847031 5.20E-44 dispersed
Cam05g2558 Cam-Chr5:33354812 Cam01g0388 Cam-Chr1:4275557 1.30E-22 transposed
Cam01g0388 Cam-Chr1:4275557 Cam10g0296 Cam-Chr10:5098968 1.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51204 PF04690 YABBY 2.90E-70 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0388 K25796 - csv:101214748 431.409