Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0410 ATGGCATCAAGAAGCATCGACGGTAGGGGTGTTCAAAATCAGACCAAAAGCTCGAAGACGAGAGGGAAAAGAAAAATGGGGAGCAGAACAAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGATTTGAATCTCTCCTCCGCTCTTCAAAACCTAAGAGCGTATAACATTGCTACCGGCAATGCTCCTCCGATCGATGTTCAACCACCTCCTGTCGTGAAGAAGAATGAGAATCGGAAACGGCAACTGGAGCCGGAATTATCTGGTAGTCCAAATTATGATGTTAGAAATAGTGACGGCCCTATGTCTCATCAAGATTACATTGATTGGAGAAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACACTTACGGAAGATGTTTTGGGAGCTTCCACCTTGGGCTTGAACTTGGTCGAATATGAAAGTGATGGGAGCACATCTTCAGAAAGTGCAGTAAAGCCAGATCATCAAAATTCCAGTCTCTTGAATGATAACAAGGAAGTTAAAAGCAAAACTGAGCAACGTTTTGCCATTGCGGGAGAACCTGTTTGTGTAGTATGTGGTAGATATGGAGAATACATATGTGATGAAACCAATGATGACATCTGCAGCATGGAGTGCAAATTGAAGCTTTTGGAAATTCTTAAACGGAGCGAGGAGTCCTCAAACTGTGAAGTGAAAGATGTTGCATTACCAGAAAGTAAATATATCCTGCCTTCCCCAGAGTTCGGGGAGGACACCTGGGATTATAAGAACCATCACTGGTCCAAAAAGAAATCCAATCTTTGTACCTATGAATGCTGGAAATGTCAAAAGCCAGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAGTAACCAGGTAATGCAACAAAAGACTTCCAATCCTGTACCAGGCGATCTCCTTGGAATATATAAAAGATGTTACCAGATAGGAAAGAATTTGTCAAATGCACTGTGCAATGAATGCAGCTGTTCATTTAGTTTGGCGACATGTCTTGATTGTAGCACTGTTTACTGTGACAGGCAAGCATTTCCATCCATTTCTTTACTTTGTTTTGCAGGTCACTTAAATGAGCACATCCACACACACCCAACTCATGGACTATATTACTCACATAAACTCAAACGTCTTCTTGGCATTCATACTGATATTTCCCTTGGTTACTTTCTCCATGTAGTGTTGTCAAGGAAATTGTTTCTCTCTCATGCTTTGGGTGACTGTTCATCTATTTTAAACGTAGCTATACCGGTAAAATGCTGCAAATCAACATGCAGGGTGACTGACATCAAGGATCTTCTGGTCTGCCATTACTGTTTTGATAAAGCTTTCGACAAGTTCTATGATATGTATACTGCATCTTGGAACGGAGCTGGGCTTTCAATCATATCAGGTTCCATTTGCTGCGAAGATCATTTTGCGTGGCATCGAATGAACTGTTTTAACGCAGATGTAGAGGACACTGCCTATATCATCAATAGGAAAGCGAAAGAAGATAAGTCTGTTTCCATTAGTGACTTTATTTTTTGA 1536 40.82 MASRSIDGRGVQNQTKSSKTRGKRKMGSRTNFYKNPSISYKKDLNLSSALQNLRAYNIATGNAPPIDVQPPPVVKKNENRKRQLEPELSGSPNYDVRNSDGPMSHQDYIDWRRKEANKSQPYETLTEDVLGASTLGLNLVEYESDGSTSSESAVKPDHQNSSLLNDNKEVKSKTEQRFAIAGEPVCVVCGRYGEYICDETNDDICSMECKLKLLEILKRSEESSNCEVKDVALPESKYILPSPEFGEDTWDYKNHHWSKKKSNLCTYECWKCQKPGHLAEDCLVKTSNQVMQQKTSNPVPGDLLGIYKRCYQIGKNLSNALCNECSCSFSLATCLDCSTVYCDRQAFPSISLLCFAGHLNEHIHTHPTHGLYYSHKLKRLLGIHTDISLGYFLHVVLSRKLFLSHALGDCSSILNVAIPVKCCKSTCRVTDIKDLLVCHYCFDKAFDKFYDMYTASWNGAGLSIISGSICCEDHFAWHRMNCFNADVEDTAYIINRKAKEDKSVSISDFIF 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4536649 4543946 + CaPI482276_01g004100.1 Cam01g0410 117492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0410 511 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 26 381 - -
Cam01g0410 511 MobiDBLite consensus disorder prediction 1 36 - -
Cam01g0410 511 MobiDBLite consensus disorder prediction 1 17 - -
Cam01g0410 511 ProSiteProfiles Zinc finger CCHC-type profile. 269 282 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam01g0410 511 MobiDBLite consensus disorder prediction 146 161 - -
Cam01g0410 511 SUPERFAMILY Retrovirus zinc finger-like domains 255 283 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam01g0410 511 Pfam HIT zinc finger 183 210 IPR007529 -
Cam01g0410 511 Gene3D - 165 224 - -
Cam01g0410 511 MobiDBLite consensus disorder prediction 61 105 - -
Cam01g0410 511 MobiDBLite consensus disorder prediction 146 169 - -
Cam01g0410 511 SMART c2hcfinal6 268 284 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0410 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0410 Cam-Chr1:4536649 Cam05g1389 Cam-Chr5:15723635 1.00E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g529 . . . . . . Bma07g01597 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0378 . . . Csa05g00417 Chy09g01092 . . Blo19g00254 . Bda09g00099 Bpe08g01430 . . . . . . . . . . . . Bhi12g00440 . . Lac11g2280 Hepe06g1668 . Lcy12g1825 Cla01g00393 Cam01g0410 . . Clacu01g0411 Cmu01g0392 Cre09g2118 Lsi09g00419 . . Cme09g01621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010911 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 31