Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0416 ATGGCATTCCTTTTTCCCTCATTTTTCTTCTCCACTTTCTTTCTCCTATGCTTTTCCGCCGCCGCCAAGCACCGCCACCACTGGGTCGGACCCACCGGACACCGCCTCATCAATGTGAATGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTGCAAGCCGCCGTGGATGCAGTTCCCGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCATACATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAACTCCGTACTTATAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGAATCTCCGGCGACAAAGCCTACTTTTCCGGCTGCGGATTCTACGGAGCACAAGATACGCTTTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTCTGAGAAGACCGGGTTTGCTTTTCTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGCCGAGCCATGGGCCAGTACTCCAGAATTGTCTATGCGTATACTTACTTTGATGATGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCTAGAGAATTGGAGTATGAAGAGGCCCATCCATTTCTTGCCAAAAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 1020 53.24 MAFLFPSFFFSTFFLLCFSAAAKHRHHWVGPTGHRLINVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPSEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEYEEAHPFLAKSFVNGRHWIAPSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4575191 4581984 + CaPI482276_01g004160.1 Cam01g0416 117498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0416 339 Gene3D - 35 338 IPR012334 -
Cam01g0416 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 335 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cam01g0416 339 SUPERFAMILY Pectin lyase-like 36 336 IPR011050 -
Cam01g0416 339 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Cam01g0416 339 FunFam Pectinesterase 32 336 - -
Cam01g0416 339 Pfam Pectinesterase 42 330 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0416 Cam-Chr1:4575191 Cam03g1623 Cam-Chr3:31224800 8.30E-88 dispersed
Cam01g0416 Cam-Chr1:4575191 Cam11g0456 Cam-Chr11:6005467 8.10E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0416 - - - 0.0