Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0452 ATGTACCAGAGCACTAAAGCAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCCGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCCGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTACCCGGTGGTGCTACCGAATGTGACGGTAAAGCCGACGGTGGTACCGGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCAGAGGATGCGGCGTTAGCTTATGATCGAGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA 789 54.37 MYQSTKAESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVSYPVVLPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4855850 4856638 + CaPI482276_01g004520.1 Cam01g0452 117534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0452 262 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 SMART rav1_2 132 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 CDD AP2 131 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677(InterPro)
Cam01g0452 262 Pfam AP2 domain 132 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0452 262 MobiDBLite consensus disorder prediction 197 227 - -
Cam01g0452 262 FunFam Ethylene-responsive transcription factor 2 131 191 - -
Cam01g0452 262 PANTHER DNA-BINDING DOMAIN 115 219 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0452 Cam-Chr1:4855850 Cam07g1714 Cam-Chr7:31900860 3.50E-33 dispersed
Cam01g0452 Cam-Chr1:4855850 Cam10g0235 Cam-Chr10:4112772 4.30E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51209 PF00847 AP2 9.90E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0452 K09286 - csv:101221583 428.713