Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0472 | ATGGTGATTTATGGTTCCTCTGCTGCACTACAGTGTTCTTTTGAGGCAGAGCGAACTTGGGTATCTCTAGGGGGAAATTCTGCCTGTGAAGGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTACTAGTGTTCCAACGCCAATGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATAGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGGCCGCCTAATACGGGGACAAATGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCTGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCGTTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGTCAAAGAGAAGGGAAAGCATGAAAATGCTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCCAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCCGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTAGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTGCTTCCCTTGTTGCTGTCACTGAAAGAAGTTGCTGATGAGGCTCGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGGCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTCGCTGCCGTCGTCCTCAGCTGTCGCCTCCCTCGCCACTACTGATCACCGCCGCCGTCACAAATCGGTTGAGGGGAGGATAA | 2604 | 43.13 | MVIYGSSAALQCSFEAERTWVSLGGNSACEGSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPMGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTIIEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIRPPNTGTNVSIKDDASEASSANSYSSHTSGSLTDSCSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNRSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDVKEKGKHENALQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLSLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLALPHKNLIPNYNLLSAIRCRRPQLSPPSPLLITAAVTNRLRGG | 867 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5045333 | 5059130 | + | CaPI482276_01g004720.1 | Cam01g0472 | 117554 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0472 | 867 | Gene3D | Phosphorylase Kinase; domain 1 | 464 | 568 | - | - | |
Cam01g0472 | 867 | SMART | serkin_6 | 496 | 758 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g0472 | 867 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 614 | 626 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g0472 | 867 | Gene3D | Transferase(Phosphotransferase) domain 1 | 569 | 774 | - | - | |
Cam01g0472 | 867 | SMART | Ubox_2 | 782 | 844 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam01g0472 | 867 | ProSiteProfiles | Protein kinase domain profile. | 496 | 758 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g0472 | 867 | SUPERFAMILY | Protein kinase-like (PK-like) | 477 | 752 | IPR011009 | - | |
Cam01g0472 | 867 | ProSitePatterns | Protein kinases ATP-binding region signature. | 502 | 523 | IPR017441 | GO:0005524(InterPro) | |
Cam01g0472 | 867 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 778 | 847 | IPR013083 | - | |
Cam01g0472 | 867 | Coils | Coil | 397 | 445 | - | - | |
Cam01g0472 | 867 | Pfam | U-box domain | 779 | 842 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam01g0472 | 867 | Pfam | Protein kinase domain | 499 | 750 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g0472 | 867 | Coils | Coil | 369 | 389 | - | - | |
Cam01g0472 | 867 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 62 | 192 | - | - | |
Cam01g0472 | 867 | PANTHER | OS02G0152300 PROTEIN | 62 | 841 | IPR051348 | - | |
Cam01g0472 | 867 | ProSiteProfiles | U-box domain profile. | 778 | 851 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam01g0472 | 867 | CDD | STK_N | 61 | 213 | - | - | |
Cam01g0472 | 867 | Gene3D | HUPs | 51 | 210 | IPR014729 | - | |
Cam01g0472 | 867 | CDD | RING-Ubox_WDSUB1-like | 780 | 834 | - | - | |
Cam01g0472 | 867 | SUPERFAMILY | RING/U-box | 773 | 842 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0472 | Cam-Chr1:5045333 | Cam05g2835 | Cam-Chr5:35422930 | 6.10E-111 | dispersed | |
Cam01g0472 | Cam-Chr1:5045333 | Cam11g0174 | Cam-Chr11:3313877 | 1.10E-128 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84855 | PF00069 | Pkinase | 3.00E-40 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0472 | - | - | - | 0.0 |