Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0472 ATGGTGATTTATGGTTCCTCTGCTGCACTACAGTGTTCTTTTGAGGCAGAGCGAACTTGGGTATCTCTAGGGGGAAATTCTGCCTGTGAAGGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTACTAGTGTTCCAACGCCAATGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATAGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGGCCGCCTAATACGGGGACAAATGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCTGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCGTTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGTCAAAGAGAAGGGAAAGCATGAAAATGCTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCCAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCCGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTAGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTGCTTCCCTTGTTGCTGTCACTGAAAGAAGTTGCTGATGAGGCTCGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGGCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTCGCTGCCGTCGTCCTCAGCTGTCGCCTCCCTCGCCACTACTGATCACCGCCGCCGTCACAAATCGGTTGAGGGGAGGATAA 2604 43.13 MVIYGSSAALQCSFEAERTWVSLGGNSACEGSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPMGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTIIEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIRPPNTGTNVSIKDDASEASSANSYSSHTSGSLTDSCSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNRSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDVKEKGKHENALQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLSLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLALPHKNLIPNYNLLSAIRCRRPQLSPPSPLLITAAVTNRLRGG 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5045333 5059130 + CaPI482276_01g004720.1 Cam01g0472 117554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0472 867 Gene3D Phosphorylase Kinase; domain 1 464 568 - -
Cam01g0472 867 SMART serkin_6 496 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0472 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g0472 867 Gene3D Transferase(Phosphotransferase) domain 1 569 774 - -
Cam01g0472 867 SMART Ubox_2 782 844 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g0472 867 ProSiteProfiles Protein kinase domain profile. 496 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0472 867 SUPERFAMILY Protein kinase-like (PK-like) 477 752 IPR011009 -
Cam01g0472 867 ProSitePatterns Protein kinases ATP-binding region signature. 502 523 IPR017441 GO:0005524(InterPro)
Cam01g0472 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 778 847 IPR013083 -
Cam01g0472 867 Coils Coil 397 445 - -
Cam01g0472 867 Pfam U-box domain 779 842 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g0472 867 Pfam Protein kinase domain 499 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0472 867 Coils Coil 369 389 - -
Cam01g0472 867 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 192 - -
Cam01g0472 867 PANTHER OS02G0152300 PROTEIN 62 841 IPR051348 -
Cam01g0472 867 ProSiteProfiles U-box domain profile. 778 851 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g0472 867 CDD STK_N 61 213 - -
Cam01g0472 867 Gene3D HUPs 51 210 IPR014729 -
Cam01g0472 867 CDD RING-Ubox_WDSUB1-like 780 834 - -
Cam01g0472 867 SUPERFAMILY RING/U-box 773 842 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0472 Cam-Chr1:5045333 Cam05g2835 Cam-Chr5:35422930 6.10E-111 dispersed
Cam01g0472 Cam-Chr1:5045333 Cam11g0174 Cam-Chr11:3313877 1.10E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84855 PF00069 Pkinase 3.00E-40 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0472 - - - 0.0