Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0475 ATGCTCAAACTAATTCTTCTCGTTGCTTCGGCCACCATTTTCCTCCTTCTCCTAATTTCCATCTTCATTTTTCGCCTTAAACTCTCTAAAAATCACCACATCCACAACCCTTCCCCCAATAAGAACAAGAAAACAGAGCACACGCCGCCGGAGCTCACCACTTTTGAGGGCGGCGAAGATTTGACGATCGACGAAATTCTAGAAGCTCCTGGGGAAGTGATCGGAAAATCCCATTATGGAACTCTGTATAAGGCTACGTTACAGAGCACCCAAACCACCCGGCTACTCAGATTCCTCCGCCCGGCCGCTGGCGGAGGAGACCATAATGACGACGTCGTTCGGTTTCTGGGTTCGATTCGGCACCGGAATTTGGTCCCGTTGCTGGGATTCTACGCCGGCGGGAGGGGCGAGAAGCTTCTGATTCATCCGTTCTACGAGCAGGGGAATTTGGCGGAGTTCATTAGAGGTGAAACAGAATCAAAAAATTGGGAGGTCATTTACAAAATCTCCATCGGAATCGCAAAAGCCCTGCATCATCTTCACAACGGATTACAAAAACCAATCCCTCACGGAAATCTCAACTCCAACAACATTCTTCTCGATCAAAATCTCCATCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGAGAAATGCTCCACGTTTCCGCCGCCGCTGGCTACAAAGCGCCGGAACTTATCAAAATGACCGACGCTGATGAACGCACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCTGCCCAAGAGCCCACGATTCGAAATCCGGTTGCTACCGGCGATTCCGGCGTTTCTGAAAATCGGATTCTCCGATGCATTCTTCAGATCGGCGAGGTTTGTTGTCGTTCTTCGCCGAATCTTCGGCCGGATTTCAAACAAGTGATTGCTAAGATCGAAGAAATCGGAAGGATTGAGATGGATTAA 972 50.1 MLKLILLVASATIFLLLLISIFIFRLKLSKNHHIHNPSPNKNKKTEHTPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKATLQSTQTTRLLRFLRPAAGGGDHNDDVVRFLGSIRHRNLVPLLGFYAGGRGEKLLIHPFYEQGNLAEFIRGETESKNWEVIYKISIGIAKALHHLHNGLQKPIPHGNLNSNNILLDQNLHPHVSDFGLHLLLNAAATREMLHVSAAAGYKAPELIKMTDADERTDVYSYGKILLELLSAQEPTIRNPVATGDSGVSENRILRCILQIGEVCCRSSPNLRPDFKQVIAKIEEIGRIEMD 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5073987 5078032 - CaPI482276_01g004750.1 Cam01g0475 117557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0475 323 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 318 IPR052451 -
Cam01g0475 323 SUPERFAMILY Protein kinase-like (PK-like) 71 315 IPR011009 -
Cam01g0475 323 Gene3D Transferase(Phosphotransferase) domain 1 62 323 - -
Cam01g0475 323 Pfam Protein tyrosine and serine/threonine kinase 72 313 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g0475 323 ProSiteProfiles Protein kinase domain profile. 68 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0475 Cam-Chr1:5073987 Cam09g0904 Cam-Chr9:9316202 1.80E-44 dispersed
Cam01g0475 Cam-Chr1:5073987 Cam07g1707 Cam-Chr7:31797385 4.50E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84856 PF07714 PK_Tyr_Ser-Thr 9.30E-27 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0475 - - - 0.0