Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0487 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAACCCAATAACAATGCCATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTTAAAAAGCTTTCAGAATTCAAAAAAACAGCTCTCAAAATCGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCGTCAAGGATTACGGCGTTGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGTCGGTTGTTGCAGGCGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGATGGGTCGGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGCAACACTGCGGGACCCGAAAACCACCAAGCAGTAGCCCTTCGGTCAGGCTCCGATCTCTCAGTGTTCTTCCGGTGCGGTTTCGAGGGATACCAAGACACTCTCTACGTGCATTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACGGTCGATTTCATCTTCGGTAACGCCGCCGTAGTTCTCCAGAACTGCATGATCTACGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTAGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTTATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCAACTGCTAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCATCAAAGTTTACTGTTGGGAATTTTATTGCTGGGACTTCATGGCTGCCTGGAACTGGAGTACCATTCACTGCTGGACTTTGA 1560 46.41 MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSEFKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGVKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLSSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTARRVKWKGYRVITSATEASKFTVGNFIAGTSWLPGTGVPFTAGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5146441 5149036 - CaPI482276_01g004870.1 Cam01g0487 117569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0487 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857(InterPro)
Cam01g0487 519 NCBIfam pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857(InterPro)
Cam01g0487 519 Gene3D - 203 519 IPR012334 -
Cam01g0487 519 Pfam Pectinesterase 209 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam01g0487 519 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Cam01g0487 519 CDD PMEI-like_3 35 175 - -
Cam01g0487 519 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Cam01g0487 519 PANTHER PECTINESTERASE 9 509 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam01g0487 519 FunFam Pectinesterase 203 519 - -
Cam01g0487 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Cam01g0487 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Cam01g0487 519 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
Cam01g0487 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0487 Cam-Chr1:5146441 Cam05g0874 Cam-Chr5:7890130 3.70E-196 dispersed
Cam01g0487 Cam-Chr1:5146441 Cam01g0651 Cam-Chr1:7169517 2.70E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0487 K01051 - csv:101216005 924.08