Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0517 ATGATGGAGAATATGAGATGTTCAATACTTAGAGGTATTGCAAGTGATTTCCGAGGAAGAGCTTCTTGTTATAAACAAGATTGGATTGGTGGTCTACGTTCAGGAATCGGGATTTTGGCGCCAACTACGTACATCTTTTTTGCTTCCGCGCTGCCCGTCATTGCTTTTGGTGAGCAATTGAGTAGGAACACAGATGGAAGCTTAAGCACAGTTGAAACTTTGGCTTCTACAGCCATTTGTGGGATTCTTCACTCCATTTTTGGTGGCCAACCTCTTCTTATTGTAGGAGTTGCTGAACCCACCATTGTTATGTACACTTATTTGTTCAACTTTGCAAAAGATAGGAAAGATTTGGGAAGAGAACTCTTCCTTGCTTGGGTTGGATGGGTTTCCGTGTGGACGGCTATGTTATTGATGCTTTTGGCAATATTCAATGCTTGTAGTCTAATCAACAGATTTACAAGAATTGCAGGAGAACTTTTTGCCATTTTGATTTCTACTTTGTTCATTCAAGAAGCTATCAAGGGAGTTGTAAGTGAGTTTAAAATTCCCAAAGCAGAGAATCCAAATATGGAGAGATATGAATTTCATTGGCTTTACACAAATGGATTGCTTGGAATCATATTTACTTTTGGAGTTTCATATTCTTCTTTGAAGAGCAGAAAGGCAAGGTCATGGTTATATGCCACAGGGTGGTTGAGAAGCTTCATTGCAGACTATGGAGTTCCTCTCATGGTTGTAGTATGGACTGCATTATCATTCAGTGTCCCAACAAAAATTCCTTCTGGAGTTCCTAGAAGACTTGTAAGCCCTTTGCCATGGGAATCTGCTTCTTTGTACCATTGGACTGTGGTCAAGGATATGGGGAAAATCCCACCCTCATACATATTTGCAGCTCTTCTCCCTGCTGTGATGATTGCAGGCCTTTACTTTTTTGATCATAGTGTTGCTTCTCAATTGGCACAACAAAAGGAGTTTAATCTTAAGAATCCTTCGGCATATCACTATGACATCTTCTTGCTTGGTTTTATGACTTTACTTTGTGGATTACTTGGGCTTCCTCCCTCAAATGGGGTTTTACCACAGTCTCCAATGCATACTAAAAGCCTTGCAGTTCTTAAGAGGCAGTTGATAAGAAAAAAGATGGTTGAAAGTGCTAAGGAAAGCATAAAAAAGAAAGCTACAAACTCAGAAATCTATGTCCAAATGCAAGATGTGTTCATAGAAATGGATGGTAGCCCAGCTGTTAGTCCACTAGAGATGGATGTAGTGGTGAAAGAATTGGAAGATTTGAAGGAAGCAGTTATGAAAGAAAACAACAACAAAGAAAATGAAAATGAAGAAGAGAAATTTGGTCATCTTGAGAAGCACATTGATTCATATCTTCCAGTTAGAGTAAATGAGCAAAGAGTGAGTAATCTGCTACAGTCAGTCCTAGTGGCTTCATTAATTTTTGCAATACCATTGGTCAAGAAGATCCCAACATCTGTGCTTTGGGGATATTTTGCTTATATGGCCATTGATAGTCTTCCTGGAAACCAATTTTGGGAAAGGATTTTGCTCCTCTTCGTCATGCCTAGTCGACGTTACAAGGTGCTAGAAAATGCTCATGCTTCCTTTGTGGAGTTGGTGCCATTCAAATACATAACCATATTCACTCTCTTTCAACTTGTGTATCTTCTTCTTTGCTATGGAGTGACTTGGATCCCTATAGCTGGAGTCTTGTTTCCCTTACCTTTCTTCTTCCTCATTACCATAAGACAACACATTCTTCCCAAAGTACTTCGATCTCGATATTTGCAAGAGCTCGATGCAGCGGAATATGAAGAAATAAAGGGATCTCCGAAGACCTCGCTTAGTTTTTCTTTCAAGGGAAAGGATTCTACTCATATAGTTGAAGGTGGAGATGAGGTTGAAATGTGTGATGCTGAAATTCTAGATGTGTTGACAACCAATAGAGGGGAGTTGAAGATTAGAACAAGAAGCTTTAATGAAGATGGACATGGTCAGGTTTATCCTGAAATAGTTGAAATAGAATGA 2040 39.41 MMENMRCSILRGIASDFRGRASCYKQDWIGGLRSGIGILAPTTYIFFASALPVIAFGEQLSRNTDGSLSTVETLASTAICGILHSIFGGQPLLIVGVAEPTIVMYTYLFNFAKDRKDLGRELFLAWVGWVSVWTAMLLMLLAIFNACSLINRFTRIAGELFAILISTLFIQEAIKGVVSEFKIPKAENPNMERYEFHWLYTNGLLGIIFTFGVSYSSLKSRKARSWLYATGWLRSFIADYGVPLMVVVWTALSFSVPTKIPSGVPRRLVSPLPWESASLYHWTVVKDMGKIPPSYIFAALLPAVMIAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDIFLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRKKMVESAKESIKKKATNSEIYVQMQDVFIEMDGSPAVSPLEMDVVVKELEDLKEAVMKENNNKENENEEEKFGHLEKHIDSYLPVRVNEQRVSNLLQSVLVASLIFAIPLVKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLENAHASFVELVPFKYITIFTLFQLVYLLLCYGVTWIPIAGVLFPLPFFFLITIRQHILPKVLRSRYLQELDAAEYEEIKGSPKTSLSFSFKGKDSTHIVEGGDEVEMCDAEILDVLTTNRGELKIRTRSFNEDGHGQVYPEIVEIE 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5439263 5452878 - CaPI482276_01g005170.1 Cam01g0517 117599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0517 679 Pfam HCO3- transporter integral membrane domain 464 606 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cam01g0517 679 Pfam HCO3- transporter integral membrane domain 9 186 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cam01g0517 679 Pfam HCO3- transporter integral membrane domain 204 376 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cam01g0517 679 Gene3D Helical hairpin bin 20 62 - -
Cam01g0517 679 FunFam probable boron transporter 2 20 62 - -
Cam01g0517 679 Coils Coil 421 448 - -
Cam01g0517 679 PANTHER ANION EXCHANGE PROTEIN 10 652 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0517 Cam-Chr1:5439263 Cam08g1768 Cam-Chr8:23901246 1.10E-261 dispersed
Cam01g0517 Cam-Chr1:5439263 Cam07g1278 Cam-Chr7:27166308 7.20E-301 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0517 K24194 - csv:101210964 1009.59