Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0574 ATGTCTATGAAGAGTTACTTGGACGCTGGCCACCAAGGATTGGTGCCCCCAATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACTGTTAAATCTCACTTGGGCTCATCTTATGGAAACTCATCAAATTCAATTCTAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCAATGTCTTTTACATCAAATAACATGAGTATCTCAGGTGCATCACTCATTGATGCATCTTCTGTCCTGCAGCACAATTCTCAGCAGGATCATAATGCTTCCCAATTGCCACAGAACCAGCAACAGGCCCGACAAGTTTCTTCAGGTGATGCGTTACTGTCTAATTCACAAACTGTCCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCGCAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTACTACAACAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGACAACAACAACAAATTTTTCAGTCTTTACCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTGTGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGGCTGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGGCATCATGCCCTTGGTGTCTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCAAAATCAGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGGCTTAATGAGATCAAATTTGGCAGTGGCGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATCATGATGTTAGAATATGGAAAAGCAGTACAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGACTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTCAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGAGTCTGCCAACCGACCGTAACACCCTTAATCGAATGGTCGCGCTGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTAGTCGGCAGAGGAACTTTGAGTGGTTCAGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTGCTAATGAGACAGAACTCCATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACATCATCGTCATTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCCTGGAACAACTGCTATAGCATCGGCACCGATGCAGACCTTGCCCAGCAGTGGTCTTTCAAGTCCTAATCTGCCTCAGCAGCAATCTCAAGTTCAACAGCAACTGCATCAGCGCCCAAACACCAACAACTTACTCGTGCAACATCATCCTCAGAGTACGCAAGGTAACAGTAACAATAACCAGGCTATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGACAACAGCAACCACTTTCTGGATCAAACACAAAAGCAAGCATTGCCGGAGCTTATACGGGATACGGAGGCAGCTCTTCTGTGGTGGCTGCAGGCACAGCCAATGCATCTGGTAGTAATACGCCTGCTCCAAGCCGAAGCAACAGTTTCAAAAGTGCTTCAACTGGTGACGTATCAGCAGCCGGTGCTCGTAGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGGCACAAAATCTTCATTTGGATGAGGATATAATGCAGGATATAGCCCATGATTTTACAGATAATGGGTTTTTTAACAGTGATCTTGATGATAATATGTGCTTCACCTGGAAAGGTCAACTAACATAA 2562 45.47 MSMKSYLDAGHQGLVPPMAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSILGTGHSNLGPVSGDTNGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSISGASLIDASSVLQHNSQQDHNASQLPQNQQQARQVSSGDALLSNSQTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVAEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQSLPTDRNTLNRMVALHPGLNNQMNSQNQLVGRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSNPLQQETSSSFNNSNQSPSSSFPGTTAIASAPMQTLPSSGLSSPNLPQQQSQVQQQLHQRPNTNNLLVQHHPQSTQGNSNNNQAMQHQMIQQLLQISNNSGGGQQQPLSGSNTKASIAGAYTGYGGSSSVVAAGTANASGSNTPAPSRSNSFKSASTGDVSAAGARSSGFNQRSADLAQNLHLDEDIMQDIAHDFTDNGFFNSDLDDNMCFTWKGQLT 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6085384 6098312 - CaPI482276_01g005740.1 Cam01g0574 117656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0574 853 MobiDBLite consensus disorder prediction 47 89 - -
Cam01g0574 853 Pfam LIM-domain binding protein 287 547 IPR029005 -
Cam01g0574 853 MobiDBLite consensus disorder prediction 125 152 - -
Cam01g0574 853 MobiDBLite consensus disorder prediction 771 802 - -
Cam01g0574 853 MobiDBLite consensus disorder prediction 629 694 - -
Cam01g0574 853 MobiDBLite consensus disorder prediction 169 189 - -
Cam01g0574 853 MobiDBLite consensus disorder prediction 173 187 - -
Cam01g0574 853 PANTHER LIM DOMAIN-BINDING PROTEIN 32 839 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0574 Cam-Chr1:6085384 Cam05g0941 Cam-Chr5:8523597 1.70E-251 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0574 - - - 0.0