Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0578 ATGGATTTTTCCGATTCCTTTTCTTCCTCCCCACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGATTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGCCGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 618 54.85 MDFSDSFSSSPLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVAAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6153415 6154032 + CaPI482276_01g005780.1 Cam01g0578 117660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0578 205 CDD AP2 45 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0578 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0578 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 203 IPR045277 GO:0003700(InterPro)
Cam01g0578 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0578 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0578 205 Pfam AP2 domain 46 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0578 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Cam01g0578 205 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Cam01g0578 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0578 205 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0314 Cam-Chr1:3497656 Cam01g0578 Cam-Chr1:6153415 4.30E-56 dispersed
Cam01g0578 Cam-Chr1:6153415 Cam10g1889 Cam-Chr10:32980969 9.30E-34 dispersed
Cam01g0578 Cam-Chr1:6153415 Cam05g0932 Cam-Chr5:8425898 5.00E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51215 PF00847 AP2 7.60E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0578 - - - 0.0