Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0607 ATGGTCGGAGAGCAAACCAGTGGGGGCGGGGGGGCTGCCCTCTCCTTCCTTCCCTTTCTCTGTCCTTTTACAGTCATGGCGATCATCAAAAAAACTCGGAGCTTGTTCAACTTTATCCATCCAAAAATTGGCAAATTCCGTATTCTGTATTCCTCCACCCACAAACCTAGTGCCCCTCTGTGTCATTTTGCCTCAGATTCGTGTACCCACAAAGCATCCGCCATTGAAACTCATCCCCACAAACCCCATTTGGTCATTGCCCTCTACGTGTTTGATGAATGTCCCCTTCGAAGTTTTTGCTCCTCTCACAAATTTACCACCACTCAACTAGCATCTACTGCTCTATCAATGATTCAGGAAAAAGGTGACCGGTTCGACCTTGTCATGGCTAACGTTAGCATGCCTGATATGGACAGTTTTTCGTTTTTGCACGTGCTCCTTAAGATGAATATTGCTGTCATTTTTATGTCCTCGGGGATGAACTTGAGTGTGGCTACGAAAGCATTGGCAGAAGGAGCATGCTATTTTCTTCAGAAACCTATTTCCAAGGATGATCTCAAATATGTGTGGCAACACGTGTATCGATGGAACAGAAACATAACCAAACAAACCCAAAAAGCAAAATGTATGGAAAAAGCCAAACCTAGAAAGGAATCTGTAGGTATCCAAATTGCAGACGCTGTTGTTTTGTCTCGGTCTGCCGCTGCAGTTAGTTATAATAATAATTGTTGCATTAATTATAAACCTATGAACTATAAAGAAACAGAGAAGAGTAAGCAAATCGTATCACATGATAGCCTGGTTGGGTCTTACTTTGGAGGAAAGAGATTAACTGATGACATAGAAGGAATAAACAGGGAAAAGAGAGTTAAATATTATTCAGAACCTACCAAGTTTGGATTTTCAAGAATTGATGAGGATCGTGAAAGAAGGAAGGAATATTATATTGCCAGTGATAGCAGATCACGTGTCGTCTGGAATGCGGAACGACGTCGGAAGTTCACAGATGCCCTTAACAAGCTAGGTGATAAATCTCGTCCAAAACTTATACTGAAGATGATGAATGAACCATGTTTGACCCTGCGCCAGGTTGCAAACCACCTGCAGAAATACAAAGCTCAAGTAGAATGCATCAAAAGGAGGAGAGAAAATAAATTACCTAATAAGAGGGAAGCATCCAAATCCGATTTCTCAGTCAGGACTCAACTTCCCCCGCTGCTGCAGCAGCACCATGAGACAAGCAGATTTTCAAATGTAGGTCTGACCTCTGGTTTGGGGGGTGAAAGATTCCAACATATAGCGCCTAAAAGTCAGCATAGTCCTAGATTGCCTGTTAGCGACTTTGTAAATTGCGATCTGAAAATGCTTCACCACAATTTTCAGCATGTCAGCTCAAACTACGATTCAGTTTCATATGACATCAATAAGGAAGTTGGATTATGCCCTGATAATATTCAAACATTTCAAAAGGTAGGGAGTGCTTTTCCCACTGACAATTGTGGGAAGTTTGCTCTCATAGGAGGGGGTGTTCAAACATCTGAGTTAAACTTCTCAAATGTATCTAAAATGACTTCAGAGGTAGCTTCTTCTGTATTTGATGAAACTCAATTCCCAAACAATCTTCTTGATGGTGTAATTCATCAGCTAGATTTGACTGCTTTCAAAATTGAGAACCAAGAAGCATTGGAATGTAGTGTTACATCTGAAGAGACCCAGTCAATGTCAAGGGACATAGCTATACTCGATTCAATCAACTTGGACAATGTTGTTGAGGTGGGACAGGAACTTCCTGCAGCTTCTGAAAGTCAAGGAAGCCAACAATTAGCAGAATATGCATATCTATTAGATGTATTAGAAGATGATCTGTACGACTTCGTTAGTGACTTGAATCTGAGTGATGTTGATAAATACAGTGAATGGCTGAGGAACACTGTACTCGAAAACAGAAACGGTCCAGACAGTTTTATCACTGACAATGCAGAGAACTTTCCAGTTGAAGACACTCGATAA 2010 41.24 MVGEQTSGGGGAALSFLPFLCPFTVMAIIKKTRSLFNFIHPKIGKFRILYSSTHKPSAPLCHFASDSCTHKASAIETHPHKPHLVIALYVFDECPLRSFCSSHKFTTTQLASTALSMIQEKGDRFDLVMANVSMPDMDSFSFLHVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISKDDLKYVWQHVYRWNRNITKQTQKAKCMEKAKPRKESVGIQIADAVVLSRSAAAVSYNNNCCINYKPMNYKETEKSKQIVSHDSLVGSYFGGKRLTDDIEGINREKRVKYYSEPTKFGFSRIDEDRERRKEYYIASDSRSRVVWNAERRRKFTDALNKLGDKSRPKLILKMMNEPCLTLRQVANHLQKYKAQVECIKRRRENKLPNKREASKSDFSVRTQLPPLLQQHHETSRFSNVGLTSGLGGERFQHIAPKSQHSPRLPVSDFVNCDLKMLHHNFQHVSSNYDSVSYDINKEVGLCPDNIQTFQKVGSAFPTDNCGKFALIGGGVQTSELNFSNVSKMTSEVASSVFDETQFPNNLLDGVIHQLDLTAFKIENQEALECSVTSEETQSMSRDIAILDSINLDNVVEVGQELPAASESQGSQQLAEYAYLLDVLEDDLYDFVSDLNLSDVDKYSEWLRNTVLENRNGPDSFITDNAENFPVEDTR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6547773 6552026 - CaPI482276_01g006070.1 Cam01g0607 117689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0607 669 SUPERFAMILY CheY-like 111 203 IPR011006 -
Cam01g0607 669 ProSiteProfiles Response regulatory domain profile. 71 194 IPR001789 GO:0000160(InterPro)
Cam01g0607 669 PANTHER TWO-COMPONENT RESPONSE REGULATOR 100 421 IPR045279 GO:0009736(InterPro)
Cam01g0607 669 Pfam Response regulator receiver domain 107 187 IPR001789 GO:0000160(InterPro)
Cam01g0607 669 SUPERFAMILY Homeodomain-like 320 374 IPR009057 -
Cam01g0607 669 NCBIfam myb-like DNA-binding domain, SHAQKYF class 322 373 IPR006447 GO:0003677(InterPro)
Cam01g0607 669 Gene3D - 318 378 - -
Cam01g0607 669 SMART REC_2 70 190 IPR001789 GO:0000160(InterPro)
Cam01g0607 669 Gene3D - 96 215 - -
Cam01g0607 669 Coils Coil 361 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0607 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0607 Cam-Chr1:6547773 Cam06g1357 Cam-Chr6:24953391 2.90E-20 dispersed
Cam01g0607 Cam-Chr1:6547773 Cam05g2438 Cam-Chr5:32333902 8.50E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002835 0 8 0 0 0 1 3 1 1 1 1 1 2 1 1 5 1 0 0 1 1 7 3 1 1 1 2 8 2 0 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51218 PF00072 Response_reg 2.50E-09 CL0304 Cam TR