Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0608 | ATGTCAAAAGCGAACGAGAGCTTCGAGTTTTTAACTACAGCAAACCTCTGCTTTTCCCTCCATATCCGAGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAACCGCCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCATGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCCAAGCTCGACAGGTGA | 1227 | 52.16 | MSKANESFEFLTTANLCFSLHIRAPKSSSYKTTSSSPFLNSLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6561955 | 6565558 | + | CaPI482276_01g006080.1 | Cam01g0608 | 117690 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0608 | 408 | ProSiteProfiles | Zinc finger C3H1-type profile. | 320 | 348 | IPR000571 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | Gene3D | - | 314 | 353 | - | - | |
Cam01g0608 | 408 | Gene3D | - | 354 | 390 | - | - | |
Cam01g0608 | 408 | Coils | Coil | 159 | 179 | - | - | |
Cam01g0608 | 408 | ProSiteProfiles | Zinc finger C3H1-type profile. | 358 | 386 | IPR000571 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 117 | 386 | IPR045877 | GO:0003729(InterPro) | |
Cam01g0608 | 408 | SMART | c3hfinal6 | 358 | 385 | IPR000571 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | SMART | c3hfinal6 | 320 | 347 | IPR000571 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | SUPERFAMILY | CCCH zinc finger | 317 | 352 | IPR036855 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | SUPERFAMILY | CCCH zinc finger | 354 | 388 | IPR036855 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | FunFam | zinc finger CCCH domain-containing protein 15-like | 314 | 353 | - | - | |
Cam01g0608 | 408 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 346 | IPR000571 | GO:0046872(InterPro) | |
Cam01g0608 | 408 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 354 | 390 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0608 | Cam-Chr1:6561955 | Cam11g0760 | Cam-Chr11:9450016 | 1.50E-35 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51219 | PF00642 | zf-CCCH | 6.60E-12 | CL0537 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0608 | K18753 | - | csv:101203274 | 623.239 |