Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0608 ATGTCAAAAGCGAACGAGAGCTTCGAGTTTTTAACTACAGCAAACCTCTGCTTTTCCCTCCATATCCGAGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAACCGCCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCATGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCCAAGCTCGACAGGTGA 1227 52.16 MSKANESFEFLTTANLCFSLHIRAPKSSSYKTTSSSPFLNSLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6561955 6565558 + CaPI482276_01g006080.1 Cam01g0608 117690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0608 408 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872(InterPro)
Cam01g0608 408 Gene3D - 314 353 - -
Cam01g0608 408 Gene3D - 354 390 - -
Cam01g0608 408 Coils Coil 159 179 - -
Cam01g0608 408 ProSiteProfiles Zinc finger C3H1-type profile. 358 386 IPR000571 GO:0046872(InterPro)
Cam01g0608 408 PANTHER CCCH ZINC FINGER/TIS11-RELATED 117 386 IPR045877 GO:0003729(InterPro)
Cam01g0608 408 SMART c3hfinal6 358 385 IPR000571 GO:0046872(InterPro)
Cam01g0608 408 SMART c3hfinal6 320 347 IPR000571 GO:0046872(InterPro)
Cam01g0608 408 SUPERFAMILY CCCH zinc finger 317 352 IPR036855 GO:0046872(InterPro)
Cam01g0608 408 SUPERFAMILY CCCH zinc finger 354 388 IPR036855 GO:0046872(InterPro)
Cam01g0608 408 FunFam zinc finger CCCH domain-containing protein 15-like 314 353 - -
Cam01g0608 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 346 IPR000571 GO:0046872(InterPro)
Cam01g0608 408 FunFam Zinc finger protein 36, C3H1 type-like 1 354 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0608 Cam-Chr1:6561955 Cam11g0760 Cam-Chr11:9450016 1.50E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51219 PF00642 zf-CCCH 6.60E-12 CL0537 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0608 K18753 - csv:101203274 623.239