Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0618 | ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCGACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGTGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATAGAGGTACTGAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACTGAGATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGAGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATCTAGTAAGGCCGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA | 666 | 48.95 | MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTRGEAEEEWAVAPSVEEEEEESCINNRGTEPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEELRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSKAAIAAATKPSKVVTSTLKLHQPSRAC | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6715785 | 6719051 | + | CaPI482276_01g006180.1 | Cam01g0618 | 117700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0618 | 221 | FunFam | Homeobox-leucine zipper protein 18 | 54 | 132 | - | - | |
Cam01g0618 | 221 | Pfam | Homeobox associated leucine zipper | 127 | 159 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g0618 | 221 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 35 | 208 | IPR050762 | - | |
Cam01g0618 | 221 | SMART | HOX_1 | 69 | 131 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0618 | 221 | SMART | halz | 127 | 170 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g0618 | 221 | Pfam | Homeodomain | 71 | 125 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0618 | 221 | SUPERFAMILY | Homeodomain-like | 59 | 128 | IPR009057 | - | |
Cam01g0618 | 221 | Gene3D | - | 77 | 123 | - | - | |
Cam01g0618 | 221 | ProSitePatterns | 'Homeobox' domain signature. | 102 | 125 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cam01g0618 | 221 | ProSiteProfiles | 'Homeobox' domain profile. | 67 | 127 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0618 | 221 | CDD | homeodomain | 70 | 128 | IPR001356 | GO:0003677(InterPro) | |
Cam01g0618 | 221 | Coils | Coil | 140 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0618 | Cam-Chr1:6715785 | Cam07g0668 | Cam-Chr7:13376876 | 1.20E-55 | dispersed | |
Cam01g0618 | Cam-Chr1:6715785 | Cam09g0376 | Cam-Chr9:4132383 | 1.80E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51220 | PF00046 | Homeodomain | 9.60E-17 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0618 | K09338 | - | csv:101206325 | 301.212 |