Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0618 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCGACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGTGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATAGAGGTACTGAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACTGAGATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGAGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATCTAGTAAGGCCGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 666 48.95 MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTRGEAEEEWAVAPSVEEEEEESCINNRGTEPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEELRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSKAAIAAATKPSKVVTSTLKLHQPSRAC 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6715785 6719051 + CaPI482276_01g006180.1 Cam01g0618 117700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0618 221 FunFam Homeobox-leucine zipper protein 18 54 132 - -
Cam01g0618 221 Pfam Homeobox associated leucine zipper 127 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g0618 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 208 IPR050762 -
Cam01g0618 221 SMART HOX_1 69 131 IPR001356 GO:0003677(InterPro)
Cam01g0618 221 SMART halz 127 170 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g0618 221 Pfam Homeodomain 71 125 IPR001356 GO:0003677(InterPro)
Cam01g0618 221 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Cam01g0618 221 Gene3D - 77 123 - -
Cam01g0618 221 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam01g0618 221 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677(InterPro)
Cam01g0618 221 CDD homeodomain 70 128 IPR001356 GO:0003677(InterPro)
Cam01g0618 221 Coils Coil 140 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0618 Cam-Chr1:6715785 Cam07g0668 Cam-Chr7:13376876 1.20E-55 dispersed
Cam01g0618 Cam-Chr1:6715785 Cam09g0376 Cam-Chr9:4132383 1.80E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51220 PF00046 Homeodomain 9.60E-17 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0618 K09338 - csv:101206325 301.212