Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0623 ATGTCCCTTCATCTCACTTATCCACTCCCGATATTCCCTCGCCAGAATGGCCTCCGGACCAAATCTCAGCCATCGCCCCCGAAGTCGATCGTCTCCTGCTCCGCTCTCAAACGCTACACCGCTGGATGTAAAAGGCAGTATACGAGTGTGATGATAGTTCCGACTGGCGTAGGCGCAGCCATTGGTGGATACGCAGGCGACGCTCTCCCGGTTGCTCGTGCCCTCGCCTCCGTCGTTGATTGCCTTATTACTCACCCTAATGTGCTAAATGCAGCAATGCTTTACTGGCCGATGCATAATGTGCTTTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTCATGGGCCCTAGAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGGAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGACTGCCTGTGATGGAATATGTTGTCACAGATACACCTCTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATAAGACATCCTGCCTCACTGCTTAGAGCCGTGCAGACATTAATGAACCGGTCGAAGGTGAATGCGGTTGCAGTTGTTGGACGATTCCCAGACGACGATGATGAAGAGACAGACAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTGTCACCTACTCCCTTATGCACATCTCTATCTCCAAAATCAGCAGCAGAGGAGTTAGGATTCACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTGAGCAAGAATTCTCAATCATTGGGGAAGGACTGCATATTGGCAGATGATGTTGATAGTGTCATTGTACCTATAAATGCATGTGGAGGGGATGGCACTCTTGCTTTTGCCAGAAGCAAACAGTTCAAGCCACTTATTATTGCGGTTGAGGAAAATGAAACAGTTCTCAGCGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTACTGGGAAGCCATAGTACATCTCCTAATGGCCACGCAGTCTCAAGTGCCCCCCGACAATTCAACTGAGCTATCTGCAGGATCTGTTGAATTCACCTACAAAAGTTGTTTATACATATTCAACACCTATTCACCAGGGAGGTCGATCGCCGGCGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGAAGCAGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTGTTCATCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGTGTGCGACGAGGAGGGTTGTGGGACTTCAACGGAGGGAGCTACTAAAAAATTGGTTCTACAATTCCAATACGTGACAACAAGATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTCTCAGATGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAACTGAGGAGAGCATCAAACAAGTACGAATCTATGTCTAACCCTGAAGAAAAGAAGCTTCAAGCTAGGTCAGGTTCTGTAAAATGGATGATCAGTAATGATGTCAAGAGCATGTCTAGCGTTGATGATGGAGATGTCGAGTCTCAGTATCATCGTCCTCGGAACCGCGACCACTTGACTAGTTTCGATTCGTTGAATTCTTGCTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTATAGCAAGCAAGAGCCAAGATGAGGTTAAAAAGCCTGTTGAAATTGAAATTCCTGAAAACTTCCTATGCCCCATTTCCTTTGAGTTGATGTTGAATCCCGTCATTGTCTCTACGGGACAGACATATGAAAGATCCAACATACAGAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAAGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTGTTATGAGAAAATTGATCTCTGAATGGTGTGAAGAGCATAATGTGAAGCTAGAGGAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGATTGCCAAAGGACTGTGCCGATCAAAACTCTGGTTCGACACCTTTCATTTGGGTCGATTCAGGAGCAGAAGATCGCCGTGACTGAGATTCGAAAGCTATCGAAAAGTAGCTCAGATCATAGGGTTGAAATAGCAGAAGCAGGAGCAATCCCACAACTGGTTAATCTTTTAACTTCAAAGGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCAAGAGCAAAACAAGAGACTTATTATGCTTTCTGGTGCTGTTTCTTACATTTCGCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCCGCTGCAACAATTTACAGCTTGTCATTAGCTGATGAGAACAAGGCGATAATTGGGGCTTCCGGAGTGATCTCGGACCTGTTAGAAATCCTCGAGATCGGTAGCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAATAAGGGCAGGGCTTTGAAGGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGGTACTTTGCGGCCATCCAGAGGCGAAGGCTACGATGTCAAATGCGAATTCACTGCTTGTTTTGACTGACATTCTGAAGACGGGGTCGCCTCGCAGCAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTATGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGACTTGGCGTGGTGGTGTCGTTGATGAAACTTGCCAATAATGGGACGGCGAGAGCGAGGCGGAAGGCTGCTTTATTGTTGGACCAACTCGGAAAATCATGA 3075 46.02 MSLHLTYPLPIFPRQNGLRTKSQPSPPKSIVSCSALKRYTAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMHNVLYVEGYALDRFAEGSWALEPVHQNRVGLVLDAGMEEELRIRHLQVADAARASLGLPVMEYVVTDTPLMVEKWIDPKTGQSTGRIRHPASLLRAVQTLMNRSKVNAVAVVGRFPDDDDEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPLCTSLSPKSAAEELGFTFLPCVLSGLSNAPQYLSKNSQSLGKDCILADDVDSVIVPINACGGDGTLAFARSKQFKPLIIAVEENETVLSDSPESLGIEAVKVSNYWEAIVHLLMATQSQVPPDNSTELSAGSVEFTYKSCLYIFNTYSPGRSIAGAGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSRENFEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYTALTFSVCDEEGCGTSTEGATKKLVLQFQYVTTRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPEEKKLQARSGSVKWMISNDVKSMSSVDDGDVESQYHRPRNRDHLTSFDSLNSCFDECSSVVHSDMEDVIASKSQDEVKKPVEIEIPENFLCPISFELMLNPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQSLILTPNFVMRKLISEWCEEHNVKLEEGLTNRKLKKYRSFEDDCQRTVPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVATQENAISCILNLSLQEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVISDLLEILEIGSPRGQKDAAGALLNLCMHQGNKGRALKAGIVKPLLKMLSDSNGSLVDDALYIMSVLCGHPEAKATMSNANSLLVLTDILKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGVVVSLMKLANNGTARARRKAALLLDQLGKS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6822297 6833103 - CaPI482276_01g006230.1 Cam01g0623 117705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0623 1024 Coils Coil 537 557 - -
Cam01g0623 1024 ProSiteProfiles U-box domain profile. 648 722 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g0623 1024 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 788 830 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 Pfam Armadillo/beta-catenin-like repeat 777 816 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 SUPERFAMILY RING/U-box 644 722 - -
Cam01g0623 1024 SMART arm_5 777 817 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 SMART arm_5 818 858 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 SMART arm_5 859 899 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 SMART arm_5 941 981 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 SMART arm_5 900 940 IPR000225 GO:0005515(InterPro)
Cam01g0623 1024 Gene3D - 746 863 IPR011989 -
Cam01g0623 1024 Pfam Protein of unknown function (DUF3326) 48 382 IPR021763 -
Cam01g0623 1024 CDD RING-Ubox_PUB 650 702 IPR045210 -
Cam01g0623 1024 PANTHER OS01G0127400 PROTEIN 19 384 IPR021763 -
Cam01g0623 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 724 IPR013083 -
Cam01g0623 1024 SMART Ubox_2 652 715 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g0623 1024 Pfam U-box domain 649 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g0623 1024 Gene3D - 864 1023 IPR011989 -
Cam01g0623 1024 SUPERFAMILY ARM repeat 748 1021 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0623 Cam-Chr1:6822297 Cam05g2319 Cam-Chr5:31267579 2.00E-52 dispersed
Cam07g0630 Cam-Chr7:11647810 Cam01g0623 Cam-Chr1:6822297 1.00E-97 transposed
Cam01g0623 Cam-Chr1:6822297 Cam05g2539 Cam-Chr5:33222124 2.80E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0623 - - - 0.0