Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0624 ATGACCAAAGAGGAAGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCAGAAAGTCAAGAAACTTCTTCAGAGGATAGAAGGAGTGTTTCAGGTTGCCATAGGTGCAGAGAATCAAAAGGTTACCGTTTTAGGAAATGTGGATCCTGCAACTTTGATCAATAAGCTGGTGAGAGCTGGCAAACATGCTGAGCTTTGGTCACAGAAAGCAAACACGAGCCCGAAACCGAAGAACAAAGACGATAAGACTCCGAACAAGGAACCAAAGCATCTCAAACTGACCTCATTCAACTGTGAAGATGACGACATTGTTGATTGTGTTGAGGAAGGAGAAGATTATGAAGCTGCACAACTTCAGTTCAGAGCAGCTAATCTTGATCTCCTTAGGCAGCAAGCAATTGAAGCGAACAATGCTGGGAAAGGCATTGGGATCAACCGAATTCCCGGGCTTGCCGGGGGAAATGGCAAGATGAACAACAACAACATCAACATCAACAACAAACCTGGGAATGGAAAGAAAATAGACCCTAATCAGCCAATGGCAATAAAAAACACCCCATCTGAGATTGACCGAAAAACTTTGGCAGCTCTGAAGATGAACAATGCTCAACTATTCGGTAACGGCCGAGAAAGTATCAATCTCGGGGAAGCAAAAAGAGCAAACAACAACGATTTGAGTTCAATGATGAGCATGGCAGGGTTCAACGGTGGCAACCTTTTGAATTTTGCCACTCCGTCTTCCATTGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTCCAACAGAACAATGGCTATGGCTATGGCTACCAGCCATCATCAACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCAACAACAACAACAACAACCAACCTTCATCAATGGCTACAATCAATACCATCAGCAGCAACCATTGATGAACATGAACAACATGGTAAATAGACAAGCAATGAACCAGCAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCACCAAACACAGGATATTACTTCAATTACAATCCAAGCCCTGTTCATCCAAGTTATCCTTATGTTCATGGCCACAATAGTAACTCTGCAGCTGAGATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATCATAAATCAGACTTTGATGTCTTGGTGTAAGGGTACCTGTGGAGAAAAATATGATTTTGGGAAATGA 1239 42.62 MTKEEDFKLLKFQTCDLRVNIHCDGCRQKVKKLLQRIEGVFQVAIGAENQKVTVLGNVDPATLINKLVRAGKHAELWSQKANTSPKPKNKDDKTPNKEPKHLKLTSFNCEDDDIVDCVEEGEDYEAAQLQFRAANLDLLRQQAIEANNAGKGIGINRIPGLAGGNGKMNNNNININNKPGNGKKIDPNQPMAIKNTPSEIDRKTLAALKMNNAQLFGNGRESINLGEAKRANNNDLSSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPSSTSGFSMATGQYHQQQQQQPTFINGYNQYHQQQPLMNMNNMVNRQAMNQQPQMMYNRAQLVPPNTGYYFNYNPSPVHPSYPYVHGHNSNSAAEMFSDENTSSSCSIINQTLMSWCKGTCGEKYDFGK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6834512 6836609 - CaPI482276_01g006240.1 Cam01g0624 117706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0624 412 MobiDBLite consensus disorder prediction 85 101 - -
Cam01g0624 412 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872(InterPro)
Cam01g0624 412 MobiDBLite consensus disorder prediction 75 101 - -
Cam01g0624 412 ProSiteProfiles Heavy-metal-associated domain profile. 12 75 IPR006121 GO:0046872(InterPro)
Cam01g0624 412 Pfam Heavy-metal-associated domain 17 73 IPR006121 GO:0046872(InterPro)
Cam01g0624 412 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 5 391 - -
Cam01g0624 412 CDD HMA 16 75 IPR006121 GO:0046872(InterPro)
Cam01g0624 412 Gene3D - 12 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0624 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0624 Cam-Chr1:6834512 Cam03g1699 Cam-Chr3:32151205 1.50E-22 dispersed
Cam01g0624 Cam-Chr1:6834512 Cam05g0634 Cam-Chr5:5518496 1.50E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g412 . . . . . Bpe10g00993 Bma14g01592 . Cmo04g01075 . Cma04g00997 . Car04g00936 Car04g00053 . . . . . . . . . . Cla07g00605 Cam07g0630 Cec07g0695 Cco07g0680 Clacu07g0636 Cmu07g0660 Cre07g1008 Cone13ag0773 Cone19ag0775 . . Lsi04g01143 . . Cme10g01508 Blo06g01023 Blo11g00735 . . Bpe11g01609 . . . . . Cmo15g00984 . Cma15g00946 . . . . . . . . . . . Cla01g00596 Cam01g0624 Cec01g0615 Cco01g0639 Clacu01g0615 Cmu01g0588 Cre09g1916 Lsi09g00646 Csa05g01046 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010233 3 1 3 2 2 1 1 0 1 1 0 0 1 1 1 1 0 2 0 0 1 1 1 1 1 0 1 3 1 1 32