Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0643 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATTCTCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGTGAGCAGAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAATCCTGAATGGAACGATGAGTTGACTCTTTCAATTGCAGATCTCAGGACTCCAATCGGTATATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAATGTTTGACAATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCACAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAACGTGGAGTGTGGTGAGGTAGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTCGGGGGTACAAGCAACTTCTGA 522 46.36 MEHFLGLLRIRVLRGVNLAIRDSRSSDPYVVVTMGEQRLKTRVVKNNCNPEWNDELTLSIADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLESLPDGCVVKRVYPKRTNNLADESQCVWHKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPVGGTSNF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7019347 7021195 + CaPI482276_01g006430.1 Cam01g0643 117725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0643 173 Gene3D C2 domain 5 164 IPR035892 -
Cam01g0643 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Cam01g0643 173 Pfam C2 domain 6 92 IPR000008 -
Cam01g0643 173 SMART C2_3c 7 102 IPR000008 -
Cam01g0643 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Cam01g0643 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0643 Cam-Chr1:7019347 Cam07g0606 Cam-Chr7:10706177 7.00E-59 dispersed
Cam01g0643 Cam-Chr1:7019347 Cam04g1089 Cam-Chr4:25030611 3.30E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0643 - - - 0.0