Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0651 ATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCCGGTATTGGTGAAACTTCTCTCATCGTCACTGATCACTTTCAAAACTCAGCCATTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCGATCGCCGAGCTCAATCATTCGGCAATCAGTTCCATGAATATCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACGGCAGCCGCCGCCACTAGTTCCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGATTACAATGATGATAGGATGCTCCTTCAGGGCGTGGTCGGGAATCGCGCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGGATGAAGAATATAATGATGATTGGAGACGGGATTGATAGGACGATCGTCACGGCCATGAAGAACGTCCAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTACGCCCACTCCAACCGCCAGTTCTATCGTGAATGCAACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCATTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGAACACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAGTTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGCAAATGGGCTATGA 1548 48.97 MSCSQTPYPDLCFHYINSNNHASTAGIGETSLIVTDHFQNSAIRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSAISSMNINSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQILSNFSKLVSNSLAITKAATAAAATSSSNSGGRRLLGGSFPKWDYNDDRMLLQGVVGNRADMVVAQDGSGNFRTISEAVAAAEEARKGSGRFVIYVKGGIYKENVVIKKRMKNIMMIGDGIDRTIVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECNIYGTVDFIFGDGIAVFQNCNIFVRKPMMHQKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFGLRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVESFLEGGGWIPATGVPFANGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7169517 7171857 - CaPI482276_01g006510.1 Cam01g0651 117733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0651 515 PANTHER PECTINESTERASE 2 506 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam01g0651 515 FunFam Pectinesterase 197 515 - -
Cam01g0651 515 CDD PMEI-like_3 2 154 - -
Cam01g0651 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 160 IPR035513 -
Cam01g0651 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 158 IPR035513 -
Cam01g0651 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Cam01g0651 515 SMART PMEI_2 1 156 IPR006501 GO:0004857(InterPro)
Cam01g0651 515 Pfam Plant invertase/pectin methylesterase inhibitor 2 156 IPR006501 GO:0004857(InterPro)
Cam01g0651 515 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
Cam01g0651 515 Pfam Pectinesterase 202 500 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam01g0651 515 NCBIfam pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857(InterPro)
Cam01g0651 515 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Cam01g0651 515 Gene3D - 198 515 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0651 Cam-Chr1:7169517 Cam05g0874 Cam-Chr5:7890130 9.50E-128 dispersed
Cam01g0487 Cam-Chr1:5146441 Cam01g0651 Cam-Chr1:7169517 2.70E-138 transposed
Cam10g0560 Cam-Chr10:8498262 Cam01g0651 Cam-Chr1:7169517 7.50E-114 transposed
Cam01g0651 Cam-Chr1:7169517 Cam05g2409 Cam-Chr5:32086869 8.10E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0651 - - - 0.0