Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0659 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGCTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGGAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGATTCTAAGCCCCCGCTTGTGAATTCGATTGCCAATGGTCAAAACAGGTCAGACCTGTCGACTAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCTGAAGATCCACCTACAAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCAACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCGCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAGCGGCGTACAATCGCTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAA 1410 44.47 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSDSKPPLVNSIANGQNRSDLSTKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKRRTIAHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7279698 7283367 - CaPI482276_01g006590.1 Cam01g0659 117741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0659 469 FunFam UBX domain-containing protein 6 343 434 - -
Cam01g0659 469 SUPERFAMILY PUG domain-like 177 241 IPR036339 -
Cam01g0659 469 Gene3D - 343 435 - -
Cam01g0659 469 MobiDBLite consensus disorder prediction 68 85 - -
Cam01g0659 469 SMART PGNneu 180 247 - -
Cam01g0659 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - GO:0050832(PANTHER)
Cam01g0659 469 SMART ubx_3 346 435 IPR001012 GO:0005515(InterPro)
Cam01g0659 469 Pfam UBX domain 350 430 IPR001012 GO:0005515(InterPro)
Cam01g0659 469 SUPERFAMILY Ubiquitin-like 320 433 IPR029071 -
Cam01g0659 469 MobiDBLite consensus disorder prediction 15 101 - -
Cam01g0659 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Cam01g0659 469 MobiDBLite consensus disorder prediction 15 52 - -
Cam01g0659 469 MobiDBLite consensus disorder prediction 53 67 - -
Cam01g0659 469 CDD PUB 167 263 - -
Cam01g0659 469 Pfam PUB domain 179 249 IPR018997 -
Cam01g0659 469 CDD UBX_UBXN6 354 434 - -
Cam01g0659 469 Gene3D - 174 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0659 Cam-Chr1:7279698 Cam11g1286 Cam-Chr11:25407995 7.60E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51222 PF00789 UBX 3.00E-05 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0659 K14011 - csv:101209321 822.387