Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0663 ATGGAAACTCAATACAAGAAAAGGCTGATTGCGATGTCACCACTTGCGAGCGTGGGCTCATTGGCTTTGTGGGCTATACGCTGTCTTTACGCTCATCGCACGCACTCAAAGACCCATCCAATTTTCCATTCCGCCCCCTTTTTTACGCGTACTTTTGTCCCCGCGATCTCTCTGCTTTCTGGGTTTTCTTTCAAGGTTCTGTTTCATTTGAGAAAGATGGCTTGTTTGGTTTCTCGTACTGGAAGGGAATTGCAGAGATATAATCATATGGGGTTTCGCCAAGTTGTGGGTTGTATACCGTATAGATTTAAATATAGTGAAGATGGGATGAAGATTTGTGATGAATATGAGGTGCTTGTGATAAGTTCTCAAAAGGGTCAAGGACTGATGTTTCCCAAGGGTGGTTGGGAACTTGATGAATCCTTGGAACAAGCTGCTTCTAGAGAGTCACTTGAAGAAGCTGGGGTTCTTGGCAAAGTTGAGTCTCAACTTGGAAAATGGAGATTCATCAGCAAAAGCCAAGGCACATATTATGAAGGCTATATGTTCCCTTTATTTGTTGAGGAACAGCTTGACCTCTGGCCAGAGAAACATGTTAGAGAAAGAATATGGATGCCTGTAGCTGAAGCTAGAGAAGTATGTAGACACTGGTGGATGAAGGAAGCTTTAGACATCTTAGTTGAAAGACTAACATCCATTGGAGAGCAAAAGGATGATGATGATCTTCTAGCAACTACTGATGATCTACTGACAGTTAAACCTTTGAAGTTCCCGCCAGAAATTCAAAGGATTCTTTGCAATTTCGAAATGAATAAAATCTTCCGGATAATGAATATCAATATTTCAACTCATGAATTACTCAATTCCACTCTGAGAAGTCCTAAATTTCTCACTCCGCTTCTACTCTTTCATGGTTCCAACAAGAATCTAACCTCAGATTCGGAGCTGGAACTCGATTCTGACAAGCTCGGTTATCGGTCTTCTATACCCACTTCTCGAAGAAGCTGGGTTTCTGAAGAACAGGTTGATCTCAGGGAGATTTCAAAAGGAAGGGAGTTGAAGGTTCAGATAGACCCATGGCCGGAGTGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGAGTCCCATTTCTTAATGCCGAATTGGGTGCAAAAGATTTCAATCATATTCGGACTGCGTGTCTTGATTTTGCAAGGGATCGGTCTAACCTTATACGGCGCTTGTCCAGGAAAGATTTACAGGTGATTGCAGGATGTGGATGCCCAAGCACAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCACATGTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGCAACCTGCGGGGAGAATGTGAGAGGGCATATGCGAAGGCATGCGGAGATGAAGGAGGTCAGACTGTGGATGTCATGCGCGTTTTGTTATTTTATGGGCTTGATCACATCTCTGCTATGGTGGAGAGCAGACCATGTTGGAACAAGAAGGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAATATAGTGCAGGAGAACGTGAATCTGATCTTCTTAAGTCTAACGAGGCTACTTCAGCAGGAAATCATGAAATAAGTGCTTCAGCGACACGAGGCGACTGGCATTGTCCAAAATGCAACTTTTTCAACTTTTCTAGAAACATCAAGTGCTTGCGCTGTGGTAGTATACCCCTCGAGAGACTTCGGAAACTAAATGAGGATCAAGCTGATCTTCCGTTGAAGAAGGGCGACTGGATTTGTGACAAGTGTAATTTCTTGAACTTTGCTAAGAATTCAACATGTTTGCAATGCAAAGAGAAGCCTTTGAATCGACAGCTGAATCAAGGGGAGTGGGAATGCGAATCGTGCAACTATATCAATTTTAGAAAGAATACGCTATGCTTGAAGTGTGATCACCGACGACCGAAAGTACTAAATACTCGAAACGTCTCTGCTGTTCCTGCAGCTGAGAATGGAAACTACAGTTTCAGTAAGCCTAAATTCTCATCTGGTAAAGTTGGTAATAATGGAAGTAGGAAAAATGATGGTTGTATGTGGAGATTTGGTGAAAATGAGGGTGAAGATGATTCTGGACTTGTGGATTTTCCTATTGCTCGTTCTTCTGGAAGTGCAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAAAGGAGAAAAAACATGGAAAATGCAATAGATAAAGAAGAAGATCTAATCTTGAGATCTGACAATATCGAAAGAAGATTTGAGTTTGTTGAATCTACTGATGATGAAGACATCATCGAATGGTTTGGACACAAGCCAGAATCAAGCAAATAG 2352 42.18 METQYKKRLIAMSPLASVGSLALWAIRCLYAHRTHSKTHPIFHSAPFFTRTFVPAISLLSGFSFKVLFHLRKMACLVSRTGRELQRYNHMGFRQVVGCIPYRFKYSEDGMKICDEYEVLVISSQKGQGLMFPKGGWELDESLEQAASRESLEEAGVLGKVESQLGKWRFISKSQGTYYEGYMFPLFVEEQLDLWPEKHVRERIWMPVAEAREVCRHWWMKEALDILVERLTSIGEQKDDDDLLATTDDLLTVKPLKFPPEIQRILCNFEMNKIFRIMNINISTHELLNSTLRSPKFLTPLLLFHGSNKNLTSDSELELDSDKLGYRSSIPTSRRSWVSEEQVDLREISKGRELKVQIDPWPEWVDFMECLSKKGYFEGDRVPFLNAELGAKDFNHIRTACLDFARDRSNLIRRLSRKDLQVIAGCGCPSTDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGECERAYAKACGDEGGQTVDVMRVLLFYGLDHISAMVESRPCWNKKANDSVRKLLKDIVEYSAGERESDLLKSNEATSAGNHEISASATRGDWHCPKCNFFNFSRNIKCLRCGSIPLERLRKLNEDQADLPLKKGDWICDKCNFLNFAKNSTCLQCKEKPLNRQLNQGEWECESCNYINFRKNTLCLKCDHRRPKVLNTRNVSAVPAAENGNYSFSKPKFSSGKVGNNGSRKNDGCMWRFGENEGEDDSGLVDFPIARSSGSAERQERRKVEMLERRKNMENAIDKEEDLILRSDNIERRFEFVESTDDEDIIEWFGHKPESSK 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7316482 7325443 - CaPI482276_01g006630.1 Cam01g0663 117745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0663 783 ProSitePatterns Zinc finger RanBP2-type signature. 552 571 IPR001876 -
Cam01g0663 783 ProSiteProfiles Zinc finger RanBP2 type profile. 592 615 IPR001876 -
Cam01g0663 783 SUPERFAMILY Ran binding protein zinc finger-like 545 574 IPR036443 -
Cam01g0663 783 SUPERFAMILY Ran binding protein zinc finger-like 586 617 IPR036443 -
Cam01g0663 783 ProSitePatterns Nudix box signature. 134 155 IPR020084 GO:0016787(InterPro)
Cam01g0663 783 CDD Nudix_Hydrolase_9 94 220 IPR047198 GO:0016462(InterPro)
Cam01g0663 783 ProSitePatterns Zinc finger RanBP2-type signature. 596 615 IPR001876 -
Cam01g0663 783 Coils Coil 722 749 - -
Cam01g0663 783 PANTHER ZINC FINGER PROTEIN 587 657 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Cam01g0663 783 SUPERFAMILY Nudix 84 230 IPR015797 -
Cam01g0663 783 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 78 229 - -
Cam01g0663 783 Pfam Zn-finger in Ran binding protein and others 627 649 IPR001876 -
Cam01g0663 783 Pfam Zn-finger in Ran binding protein and others 592 616 IPR001876 -
Cam01g0663 783 Pfam Zn-finger in Ran binding protein and others 550 573 IPR001876 -
Cam01g0663 783 FunFam Nudix hydrolase 17, mitochondrial 77 229 - -
Cam01g0663 783 ProSiteProfiles Zinc finger RanBP2 type profile. 548 577 IPR001876 -
Cam01g0663 783 SUPERFAMILY Ran binding protein zinc finger-like 621 654 IPR036443 -
Cam01g0663 783 ProSiteProfiles Nudix hydrolase domain profile. 91 227 IPR000086 -
Cam01g0663 783 SMART zf_4 594 618 IPR001876 -
Cam01g0663 783 SMART zf_4 550 574 IPR001876 -
Cam01g0663 783 SMART zf_4 627 651 IPR001876 -
Cam01g0663 783 ProSitePatterns Zinc finger RanBP2-type signature. 629 648 IPR001876 -
Cam01g0663 783 ProSiteProfiles Zinc finger RanBP2 type profile. 625 654 IPR001876 -
Cam01g0663 783 Gene3D - 544 575 - -
Cam01g0663 783 Gene3D - 621 654 - -
Cam01g0663 783 Gene3D - 583 620 - -
Cam01g0663 783 Pfam NUDIX domain 114 216 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0663 Cam-Chr1:7316482 Cam03g0891 Cam-Chr3:11290679 1.40E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g490 . Blo16g00750 . . . . . . . . . . . . . . Cpe01g01832 . . . . . . . . . . . . . . . . Cone6ag0369 Cone9ag0399 . . . . . . . . . . . Bma06g01128 . . Cmo15g01025 . Cma15g00978 . Car15g00924 Cpe13g00349 . Bhi12g00937 . . . . . . Cla01g00636 Cam01g0663 Cec01g0655 Cco01g0682 Clacu01g0652 Cmu01g0626 Cre09g1878 Lsi09g00685 . . Cme09g01347
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29