Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0669 ATGTCTTCCCCATCCTTTCCTCCTTCCATGGAGCCTCCCGCCCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCTCCAACTCTGACGGCTCCACTTCCCCCATCGGCCCCCTCGCCCTTCTCTTGGGCCGCGCCACTGGCCGCCGTGGAACTTCTATGCTGGTTCGGGAGACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTGGTAGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCACTCCGCCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTGTTGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGACGGCTAGGGATATGGAGACGCAGCAACAGCAGCAGTCTGATGGATATGTAACTAATGAAAGCGATGAAGAAGATGGTAGCCCCAGGAACATGTCCGGTGTTGTGAAAAGATGCGAGTCAGTAAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTTGTGGCTGGTGGTAACATCCTCATGCAGAATGCCCCATCTTTATACTGGCTGGCTGTCGTATTCCTGGCATTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAGATATCGGTATCAAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCGGTAGAAACTAGCAGTAGATACTTGACGACTGAGCGTGTTCTATCACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATATGAGGATGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAATATTCTAAAAAATTCTGAACCTGTGTAA 1068 49.06 MSSPSFPPSMEPPAQQIPLLPSRQPSNSDGSTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSADEKPNTPIRLWIVVYAAQCLVHAVLVWFEFRRRNARTARDMETQQQQQSDGYVTNESDEEDGSPRNMSGVVKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPRYRYQVSNEPSPGDGLMVPVETSSRYLTTERVLSREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNSEPV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7370625 7374399 - CaPI482276_01g006690.1 Cam01g0669 117751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0669 355 Pfam Ring finger domain 303 345 IPR001841 -
Cam01g0669 355 SUPERFAMILY RING/U-box 291 350 - -
Cam01g0669 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Cam01g0669 355 SMART ring_2 304 344 IPR001841 -
Cam01g0669 355 MobiDBLite consensus disorder prediction 1 32 - -
Cam01g0669 355 FunFam E3 ubiquitin protein ligase RIE1 284 352 - -
Cam01g0669 355 PANTHER TARGET OF ERK KINASE MPK-1 43 349 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cam01g0669 355 CDD RING-H2_PA-TM-RING 303 345 - -
Cam01g0669 355 MobiDBLite consensus disorder prediction 138 166 - -
Cam01g0669 355 MobiDBLite consensus disorder prediction 1 19 - -
Cam01g0669 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 350 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0669 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0669 Cam-Chr1:7370625 Cam05g0209 Cam-Chr5:2119364 3.00E-88 dispersed
Cam01g0669 Cam-Chr1:7370625 Cam07g1528 Cam-Chr7:29911863 6.20E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g498 . . . . . Bpe10g00999 Bma14g01932 Bma15g00027 . . . . . . . . Cpe01g01827 . . . . . . . Cla05g02670 Cam05g2867 Cec05g2904 Cco05g2936 Clacu05g2871 Cmu05g2717 Cre05g2834 Cone13ag0728 . . . . . . . Blo06g01030 . . . . . . . . . Cmo15g01028 . Cma15g00981 . . Cpe13g00346 . Bhi12g00945 . . . . . . Cla01g00642 Cam01g0669 Cec01g0661 Cco01g0687 Clacu01g0658 Cmu01g0631 Cre09g1874 Lsi09g00690 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam11g0520 . 100 325 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cam06g1283 . 105 409 C3H Transcription Factor Family AT1G11020 75.6 1.7e-135 479.2
Cam07g1487 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G08750 61.0 4.7e-121 431.4
Cam10g0890 . 26 456 C3H Transcription Factor Family AT3G16090 71.8 2.4e-168 589.0
Cam11g0520 . 96 324 C3H Transcription Factor Family AT5G38895 57.4 1.2e-73 273.9
Cam08g2009 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.2e-79 293.1
Cam01g1661 . 16 225 C3H Transcription Factor Family AT1G19310 58.4 3.2e-67 251.9
Cam01g1955 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 1.9e-159 558.9
Cam08g1520 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.0e-40 161.8
Cam06g1639 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.7e-179 624.0
Cam01g0608 . 128 359 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam07g0061 . 25 372 C3H Transcription Factor Family AT2G30580 51.1 8.9e-82 300.8
Cam09g2180 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G63780 57.2 7.8e-116 414.1
Cam10g1724 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 3.7e-104 375.6
Cam09g2180 . 48 347 C3H Transcription Factor Family AT4G26580 63.7 6.9e-111 397.5
Cam04g0617 . 28 492 C3H Transcription Factor Family AT5G01960 68.7 6.6e-167 583.9
Cam07g0542 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 1.5e-150 529.6
Cam02g1133 . 1 152 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Cam02g0314 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 4.9e-38 154.5
Cam02g2364 . 1 245 C3H Transcription Factor Family AT5G19430 53.3 2.2e-64 242.7
Cam07g1439 . 130 585 C3H Transcription Factor Family AT5G45290 52.7 6.0e-104 375.2
Cam02g2364 . 40 245 C3H Transcription Factor Family AT5G12310 56.4 2.7e-59 225.7
Cam06g1537 . 412 704 C3H Transcription Factor Family AT5G05810 52.8 2.2e-74 276.6
Cam11g0671 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 4.0e-45 178.3
Cam04g0750 . 482 612 C3H Transcription Factor Family AT5G05830 61.8 3.0e-40 162.2
Cam06g0968 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 6.2e-96 348.2
Cam11g0520 . 100 325 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cam11g0705 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 4.9e-115 411.0
Cam09g0661 . 35 307 C3H Transcription Factor Family AT1G63900 75.5 9.1e-117 416.8
Cam05g0315 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 1.9e-120 429.5
Cam08g2009 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.0e-41 163.3
Cam05g1761 . 3 314 C3H Transcription Factor Family AT5G20910 63.1 7.1e-110 394.0
Cam10g0890 . 144 444 C3H Transcription Factor Family AT1G65040 69.3 8.6e-111 397.1
Cam01g1661 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 4.3e-72 268.1
Cam08g2009 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.8e-70 260.8
Cam10g1604 . 1 317 C3H Transcription Factor Family AT3G10810 53.3 8.4e-81 298.1
Cam01g0249 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.9e-45 179.1
Cam01g0669 . 18 353 C3H Transcription Factor Family AT1G68070 64.1 6.0e-118 421.0
Cam11g1908 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cam08g1746 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.6e-112 402.5
Cam10g0013 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.1e-39 157.9
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam01g1548 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Cam10g1782 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cam04g0103 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Cam05g1062 . 671 928 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cam05g1061 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 9.7e-128 453.4
Cam02g2452 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cam01g0781 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.2e-125 446.4
Cam06g0099 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cam05g2872 . 197 445 C3H Transcription Factor Family AT2G41980 79.1 1.1e-120 429.9
Cam05g0636 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cam10g2000 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.3e-85 313.5
Cam06g1842 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.6e-127 452.6
Cam01g1436 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Cam11g1908 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cam09g1833 . 35 403 C3H Transcription Factor Family AT3G18930 54.4 3.0e-84 309.3
Cam10g0047 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 6.9e-75 277.3
Cam10g2038 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.1e-68 254.6
Cam06g1639 . 34 490 C3H Transcription Factor Family AT1G73950 72.4 5.9e-195 677.2
Cam08g0171 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.2e-39 157.9
Cam01g0669 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.1e-74 274.6
Cam10g0346 . 127 336 C3H Transcription Factor Family AT2G01735 53.3 4.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004997 2 5 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 41