Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0683 ATGGGTATGAAAATGCAGCAGGGCAACAACGCTGTGGCTATGAAGTGTAACGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTGAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTATTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGCGAGCAGAGAGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCGTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCCATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCAGAGAGGGATATCTTTGAAAAGCAACACGGGTGGTTGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCATATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTTTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAGTCCAAATTGCCATCTAAACCAACCGAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTGAACGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTGACTACAGCATTCTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGACTTTCATGAGATGAAAAAACTGAAATTTCGCGCGGAGGCTGCTGATGTGGCAAAATCCCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGCATCCTTGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCTACACAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCCAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCGTTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGCATTCTAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTGACTTATTCATATCGGGTGGTCGTGAATTTCAAACTTTGAGTGGATGTGAGGCAGCCGATGACCAGAACAGCTGGGATAACTTTAAACATCTGATTGCTGATGAGGACTTCCAGTTGAATGGCACTCCGAACAACATGGTAGTTTCCAAGGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTCTTACATGCCCAAAATCGAGTTTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGCAATTATGGGGGGACTGGTATTGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTCTAGGAAAATGTAAGAAGAATTCAATCAATGATATGAAAAAACCCAGCTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAGGCAATCATAGTTGACAGGAAACATGTTAGAGCTTCTGTGACCAGATATCATTTGAAGAGACTTGGTGTTATAGTTGAAGTCACCAGTACCATCAACATGGCAGCTTCTTTATGCAGAGAAAATGGATCCACAGTGCCAGGAAACTCAATCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTAAAGTCTGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGGAGTTCGTTTAAGTTACCAAAGCTGATCCTTCTTGCTACAAATATTACCACTGCAGAACTAGACAAGGCAAGAACAGCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTAAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGAGGAAGGGGCCTACCGAATGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTTATCAGGATGATGGAGAACAAGGCAAACGAAGGAGGACCGTCTGCAGCGGAAGGCAAGTGGCATATGCCGATATTAGCAATGACTGCAGATGTGATTCATGCTACGTATGATGAATGCCTGAAATGCGGAATGGATGGCTATGTGAAAAGAGCCGGAGGCAAAATCTCCATTGCAGACCTCTTTGATGGTGGGTTGGAAGTACCAGCAAGTTTTGACACCATTGCTGGTGCTAACTGTCTTCTTGCTTCGACGAGAGCGTCGGGAATTCTTGACTGGCATTGA 3045 43.61 MGMKMQQGNNAVAMKCNEQMGTTKKGYTFVEANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWLIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMKKLKFRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGREFQTLSGCEAADDQNSWDNFKHLIADEDFQLNGTPNNMVVSKEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPSSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGVIVEVTSTINMAASLCRENGSTVPGNSILPDMILVEKDTLKSDEECGIIHQLNWKLNGSSFKLPKLILLATNITTAELDKARTAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKANEGGPSAAEGKWHMPILAMTADVIHATYDECLKCGMDGYVKRAGGKISIADLFDGGLEVPASFDTIAGANCLLASTRASGILDWH 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7571827 7578181 - CaPI482276_01g006830.1 Cam01g0683 117765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0683 1014 Pfam CHASE domain 111 291 IPR006189 -
Cam01g0683 1014 CDD REC_hyHK_CKI1_RcsC-like 858 983 - -
Cam01g0683 1014 PRINTS Bacterial sensor protein C-terminal signature 601 615 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam01g0683 1014 PRINTS Bacterial sensor protein C-terminal signature 636 654 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam01g0683 1014 PRINTS Bacterial sensor protein C-terminal signature 619 629 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam01g0683 1014 PRINTS Bacterial sensor protein C-terminal signature 660 673 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam01g0683 1014 Gene3D CHASE domain 112 327 IPR042240 -
Cam01g0683 1014 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Cam01g0683 1014 Gene3D - 848 980 - -
Cam01g0683 1014 Gene3D - 59 111 - -
Cam01g0683 1014 CDD HisKA 381 442 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam01g0683 1014 Gene3D - 354 444 - -
Cam01g0683 1014 SMART CHASE_2 108 293 IPR006189 -
Cam01g0683 1014 SUPERFAMILY CheY-like 855 969 IPR011006 -
Cam01g0683 1014 ProSiteProfiles Histidine kinase domain profile. 388 676 IPR005467 -
Cam01g0683 1014 ProSiteProfiles Response regulatory domain profile. 857 986 IPR001789 GO:0000160(InterPro)
Cam01g0683 1014 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 969 IPR050956 -
Cam01g0683 1014 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam01g0683 1014 SMART REC_2 856 982 IPR001789 GO:0000160(InterPro)
Cam01g0683 1014 Coils Coil 431 451 - -
Cam01g0683 1014 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 599 671 IPR003594 -
Cam01g0683 1014 Gene3D - 445 679 IPR036890 -
Cam01g0683 1014 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam01g0683 1014 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 671 IPR036890 -
Cam01g0683 1014 SUPERFAMILY CheY-like 696 833 IPR011006 -
Cam01g0683 1014 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Cam01g0683 1014 Pfam Response regulator receiver domain 858 970 IPR001789 GO:0000160(InterPro)
Cam01g0683 1014 FunFam Histidine kinase 4 112 327 - -
Cam01g0683 1014 SMART HisKA_10 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam01g0683 1014 FunFam Histidine kinase 4 353 444 - -
Cam01g0683 1014 ProSiteProfiles Response regulatory domain profile. 701 831 IPR001789 GO:0000160(InterPro)
Cam01g0683 1014 SMART HKATPase_4 493 676 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0683 Cam-Chr1:7571827 Cam11g0114 Cam-Chr11:2783103 0.00E+00 dispersed
Cam01g0683 Cam-Chr1:7571827 Cam02g0287 Cam-Chr2:3642023 6.40E-277 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51225 PF02518 HATPase_c 2.10E-31 CL0025 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0683 K14489 - csv:101209777 1829.3