Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0692 ATGGCTGAGAAACATGGAGAAGTCATGTGGCCAAGATTGCTTGCTAATAAGATTTTGAAGAAGAGACTGGGAAGCAATAACTTTGTGGCAGATATTCCAAGCAACAATAATTCAGAAGCTTTGCTTGAGATTCCACTCTTTGGTCAATCTTCTTCAGTCCCAAATGGCTTCTATAGACCTCCCATCCAAAATTACAAGGTTTTTGTTAGTACATGGAATGTTGGAGGAGTTGCACCAAATGAAGATTTGGACATGGAGGATTGGGTGGACATTTCTTGTGACATCTATGTTTTTGGTTTCCAAGAAATTGTGCCTCTAAAAGCCTCAAATGTGTTCGGATCAGAGAATAGAAAAATATGTTCAGAATGGAATTCAATGATAAGAGAAGTTTTGAAGAAGAAAGTGAAAGAAAATTTCAAGTGTATTATAAGCAAGCAAATGGTTGGGATAATGATCTCAATTTGGGTTCGAAGTGATCTTCATCCATTCATTCGAAGTCCAAGTGTATCTTGCATTGGTTGTGGCATTATGAGCTGCCTCGGAAACAAGGGATCAGTATCAGTTAGATTTCGATTGCATGAAACAAGCTTTTGTTTTGTGTGCACTCATTTGGCATCAGGAGGAAAAGAAGGAGATGAAAAGAATAGAAATCAAAATGTTTGTGATATATTTTGTCGCACTACCTTTCCAAAGGGCCCTTCTCTGGATTTGCCCAAAAAAATTCTCCAACATGACCGAGTTGTGTTGCTTGGGGACTTGAATTATAGAGTTTCTCTACCCGAAGCAACTACAAGATTGTTGGTAGAAAGAAAGGATTGGAACACTTTATTACAAAATGATCAGCTAAAGATGGAGATGATGGATGGTCAAGTATTGGAAGGATGGCAAGAAGGGAACATCAAATTTGGGCCAACTTACAAATATTATAGAAATTCAGAGATTTATTATGGAACTTTACATGGCCTCAAAGCTGAAAAAAGGAGAGCTCCTGCATGGTGTGACAGAATTATATGGACTGGAAAGGGACTAAAACAAGTATCATACAATCGAGGGGAATCAAATCTATCTGATCATAGACCGCTCTGCGGAACCACCTGTCACCAAGTCTTCGGCTGGGGGTTTATTGCACAAAAAGGTTGGGATGCTGGCCCCCTAACAGGGAACTGGGAAGCCCCAACGAGTGCCACTTGCAAAGCCCCGCGTGAAAAACTAGATAATCTCACTTTAGAGGATACACACAAATATGTCGAAAGAGCAATTGGTTGGTGGAGTGGGCCTTCAAGAAGTCACAAGGCCCATGAATTAACTATTGGGCCTAAGAAGAATGGTGAAATTGAATCAGAGGACAAGATGGTCATCCTAATACCGGATACTAGACTTAAGGAAAAGGCTAAAAGAAAGGGTGCCATGGGCCGAGCTCATACCACATGTTTGGCATCGGCTATTCCCAAGTCGAGCCCTAGGAAACCCTAG 1473 40.87 MAEKHGEVMWPRLLANKILKKRLGSNNFVADIPSNNNSEALLEIPLFGQSSSVPNGFYRPPIQNYKVFVSTWNVGGVAPNEDLDMEDWVDISCDIYVFGFQEIVPLKASNVFGSENRKICSEWNSMIREVLKKKVKENFKCIISKQMVGIMISIWVRSDLHPFIRSPSVSCIGCGIMSCLGNKGSVSVRFRLHETSFCFVCTHLASGGKEGDEKNRNQNVCDIFCRTTFPKGPSLDLPKKILQHDRVVLLGDLNYRVSLPEATTRLLVERKDWNTLLQNDQLKMEMMDGQVLEGWQEGNIKFGPTYKYYRNSEIYYGTLHGLKAEKRRAPAWCDRIIWTGKGLKQVSYNRGESNLSDHRPLCGTTCHQVFGWGFIAQKGWDAGPLTGNWEAPTSATCKAPREKLDNLTLEDTHKYVERAIGWWSGPSRSHKAHELTIGPKKNGEIESEDKMVILIPDTRLKEKAKRKGAMGRAHTTCLASAIPKSSPRKP 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7724612 7732231 + CaPI482276_01g006920.1 Cam01g0692 117774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0692 490 Gene3D Endonuclease/exonuclease/phosphatase 59 371 IPR036691 -
Cam01g0692 490 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 62 135 IPR045849 GO:0004439(PANTHER)|GO:0004445(InterPro)|GO:0034485(PANTHER)|GO:0046856(PANTHER)
Cam01g0692 490 Pfam Endonuclease/Exonuclease/phosphatase family 2 71 361 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cam01g0692 490 MobiDBLite consensus disorder prediction 465 490 - -
Cam01g0692 490 SMART i5p_5 63 376 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cam01g0692 490 SUPERFAMILY DNase I-like 57 364 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0692 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0692 Cam-Chr1:7724612 Cam10g2051 Cam-Chr10:34335874 2.00E-79 dispersed
Cam01g0692 Cam-Chr1:7724612 Cam09g0706 Cam-Chr9:7009044 1.20E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g547 . . . . . . . . . . . . . . . . Cpe01g01861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02242 . Cma04g02149 Cma15g00882 Car04g02082 Car15g00829 Cpe13g00433 . Bhi12g00977 . . . . . Lcy10g1586 Cla01g00661 Cam01g0692 Cec01g0684 Cco01g0712 Clacu01g0680 Cmu01g0655 Cre09g1851 Lsi09g00715 Csa05g01288 . Cme09g01292
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013390 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 27