Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0695 | ATGTTGAAACCTTCAACTTCTTCTTCTTCTGGTGGTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCACCGGCGCCGCCACAAAGTGCCTTGGAAGTTACTAAAGAGAGCGGAGACGGCGGAGAGTGTGAAGAAAAAGGTGTTTGTTTGTCCGGAGCCGACGTGTCTTCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGGAGAAAGCATAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAGCACCAAGACACTTGCAATCTCCGCCAGATGAGGTCCGATCAGTTGCAACCAGTGGTGCCGCCGTTACCACCACCGCTGTTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCATAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCGGATCGAAACATCAACATCAATTTACCCGATCACCACGATCTCGAACTTCATCTCTCTTCTCCGAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCCGAATGACGAGTGTCAACTCGAGCTGGCGATAGCGGAGAAGGCGTACGCAGACGAAGCAAGACGAGAGGCGAAACGACAGATCGAAATCGCCGAAGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACTATTATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTTCACATGAGTTCGGCCGCTCCTGAAGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA | 1164 | 48.97 | MLKPSTSSSSGGLPLPPPLPPPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRQMRSDQLQPVVPPLPPPLLLQPYSRSVSYTGASTSNDHSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDECQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7792728 | 7794507 | + | CaPI482276_01g006950.1 | Cam01g0695 | 117777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0695 | 387 | FunFam | protein indeterminate-domain 12-like | 39 | 109 | - | - | |
Cam01g0695 | 387 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - | |
Cam01g0695 | 387 | SMART | c2h2final6 | 60 | 82 | IPR013087 | - | |
Cam01g0695 | 387 | SMART | c2h2final6 | 139 | 166 | IPR013087 | - | |
Cam01g0695 | 387 | Coils | Coil | 302 | 343 | - | - | |
Cam01g0695 | 387 | Gene3D | Classic Zinc Finger | 38 | 106 | - | - | |
Cam01g0695 | 387 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 60 | 82 | IPR013087 | - | |
Cam01g0695 | 387 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cam01g0695 | 387 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 166 | 188 | - | - | |
Cam01g0695 | 387 | Gene3D | Classic Zinc Finger | 124 | 199 | - | - | |
Cam01g0695 | 387 | SUPERFAMILY | beta-beta-alpha zinc fingers | 59 | 159 | IPR036236 | - | |
Cam01g0695 | 387 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 99 | 133 | - | - | |
Cam01g0695 | 387 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 341 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cam01g0695 | 387 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 62 | 82 | IPR013087 | - | |
Cam01g0695 | 387 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 138 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0695 | Cam-Chr1:7792728 | Cam04g1313 | Cam-Chr4:26921445 | 8.30E-92 | dispersed | |
Cam01g0695 | Cam-Chr1:7792728 | Cam01g1981 | Cam-Chr1:33100665 | 4.40E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51228 | None | None | None | None | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0695 | K25871 | - | csv:101210468 | 674.47 |