Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0727 ATGAATGGAGATGTAGCTCCGGCAGCCGCTCCGGCGGGCTCAGCCGAGCCCCAGTACGTCAGGGCTAAGACTTCTGTATGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGCTGCGATCCTCACGCCATCGCACAAAACATCAGTTCCGCCCTCGTTAAGATCAACTATTGCGGCCCTGTTTCCATTTCCGCTTATGGAGACACTAATCGCATTCCCAATTCTATTCAGCAAGCTCTTTCCAGTACTGGCATCGCCTTGAATCATGTCCCTGCCGGTGTTAAAGATGCAAGTGACAAGAAGATTCTAGTCGATATGTTGTTTTGGGCAGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCTGGTGATAGGGATTTTTCTAACGCACTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAAGGCTTCTGCACCACTAGTTGCAGCAGCAAAGAGTATTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACCCCCAATGTCCAGTGCTGAATCATCTCAACTTGTGAATGGTATCCTTACTTCTGACCCGCAAATATCACAGGGCTCTGGATTTGATCACAATCAGCAGACAGGACAAGCTATAGTATATAAATCTGAAAATGTCTCTTTGGGAAACCAAAGATCGTATTCTACTGAGAGGATGGGCGACAACAAGCATAAAGGTAAATATATACAGAAAAGCTCCAACCAACCAGTCCTATCCAGAGCTTTAAGCTCACCTGTTTCTATGCAAGAGAAAAACCCTAATTTTTTAAACCAACCGAATCATATGCAAGCAAAGCAATTTAAGAAAGCACCCCATGAATTCTTTGGTAATAGCAATCCTATAGCCTCTTCTAGTCAGTCTACTCCAACCCCGTTTATTGAAAATTCCAGTCATGCTAGGACTGATGGCAATGTTCCAATGGGTAGTTCCTCGAGTTACCAACCTCCTCACATGGGTCTTGCTAGGACTGATGGCAATATGTCAATGGGTAGTTCTTCAAGTTACCAACCTCCCCACATGAGGCAAAACAACATGCAGCTCCATCCTCCTTTTCGTCCAGATAATGTTTTTCCTCCTAACTCCCTTAATCATAATTCTTTTCCAGTCCCTGGTCAACCTGATCTCTCTGCACCCAATATTAGTAAGCTACATATCTCTGATTATCCCAATTATGCTATAAATCCTCAAAATTTCCATCATCAAGCTGGTGAATTTAGACCACATACCAAGTCTCAAAATCCAAACTTTAATTCACCAGACAAAGGCCGTAGTCAGCATGGTGGCCATTCATTCCATCATGATGCATTGAATAAAAGACATGCTCGTGATGTAGTAGAGTATACACCTCATTCATCTTCTACCACTGTTACTAGAAGTTTATCTTATAATGATGCCTGGGGATCTCAGGGGCAACCCCCACCTTCGGAGTACATTCAAGGCCTTATTGGAGTTATTCTTCTTGCATTAAACACCCTGAAAACAGAAAAAATTATGCCAACTGAGGCAAATATAGCTGACTGCATCCGATATGGAGATTTGAGAAACAGCAATACTGATGTAAAAATGGCACTAGATAGTGCGATAGAGCATAATATGGTAGTGAAGCAGAATTTAGGAGCAGTGCAATTGTATGTTGGTAAAACAGAAAAACTGTGGAAGTGTGTGAACCCTCTAGGTGGGCATCCTAATCAATACCAAAAAGCTATATGGGATAAGATTCATAATTGTTTAGCTTCTCCAGCTGGTCGATCTGCAATAATGGCCTCTCGTTGCAGATATGAAGCAGCATTGATTCTGAAGAAAGAATGCTTAACAGATTTTGCCTTGGGCGATGTGCTTCAGATTTTGAATATGATAACCTCAATGAAGAAATGGATTACTCATCACATTTCAGGATGGCAGCCAATTAATATTATGCTAACAGAAGTTAACACAGATGCAAGTTCAAGAACTGAACTTGATTGA 1995 41.95 MNGDVAPAAAPAGSAEPQYVRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSIWLWMSLVAGGPPMSSAESSQLVNGILTSDPQISQGSGFDHNQQTGQAIVYKSENVSLGNQRSYSTERMGDNKHKGKYIQKSSNQPVLSRALSSPVSMQEKNPNFLNQPNHMQAKQFKKAPHEFFGNSNPIASSSQSTPTPFIENSSHARTDGNVPMGSSSSYQPPHMGLARTDGNMSMGSSSSYQPPHMRQNNMQLHPPFRPDNVFPPNSLNHNSFPVPGQPDLSAPNISKLHISDYPNYAINPQNFHHQAGEFRPHTKSQNPNFNSPDKGRSQHGGHSFHHDALNKRHARDVVEYTPHSSSTTVTRSLSYNDAWGSQGQPPPSEYIQGLIGVILLALNTLKTEKIMPTEANIADCIRYGDLRNSNTDVKMALDSAIEHNMVVKQNLGAVQLYVGKTEKLWKCVNPLGGHPNQYQKAIWDKIHNCLASPAGRSAIMASRCRYEAALILKKECLTDFALGDVLQILNMITSMKKWITHHISGWQPINIMLTEVNTDASSRTELD 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8130244 8133276 + CaPI482276_01g007270.1 Cam01g0727 117809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0727 664 Pfam OST-HTH Associated domain 599 655 IPR025677 -
Cam01g0727 664 MobiDBLite consensus disorder prediction 222 247 - -
Cam01g0727 664 MobiDBLite consensus disorder prediction 292 327 - -
Cam01g0727 664 MobiDBLite consensus disorder prediction 292 375 - -
Cam01g0727 664 Pfam NYN domain 23 159 IPR021139 GO:0004540(InterPro)
Cam01g0727 664 Gene3D - 18 165 - -
Cam01g0727 664 CDD PIN_limkain_b1_N_like 23 147 - -
Cam01g0727 664 MobiDBLite consensus disorder prediction 413 442 - -
Cam01g0727 664 PANTHER LIMKAIN B LKAP 13 565 IPR024768 GO:0005777(InterPro)|GO:0010468(InterPro)
Cam01g0727 664 MobiDBLite consensus disorder prediction 417 434 - -
Cam01g0727 664 MobiDBLite consensus disorder prediction 335 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0727 Cam-Chr1:8130244 Cam02g0081 Cam-Chr2:1931988 5.00E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0727 - - - 0.0