Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0768 ATGAAGCTGATTGATTGTCTGCTGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCAAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAAGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGGTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAATATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1392 46.19 MKLIDCLLTPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8565639 8568554 + CaPI482276_01g007680.1 Cam01g0768 117850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0768 463 SMART iq_5 117 139 IPR000048 GO:0005515(InterPro)
Cam01g0768 463 Gene3D - 119 168 - -
Cam01g0768 463 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515(InterPro)
Cam01g0768 463 Pfam Protein of unknown function (DUF4005) 344 423 IPR025064 -
Cam01g0768 463 ProSiteProfiles IQ motif profile. 142 169 - -
Cam01g0768 463 ProSiteProfiles IQ motif profile. 118 146 - -
Cam01g0768 463 PANTHER IQ-DOMAIN 5-RELATED 18 396 - -
Cam01g0768 463 MobiDBLite consensus disorder prediction 292 353 - -
Cam01g0768 463 MobiDBLite consensus disorder prediction 413 463 - -
Cam01g0768 463 MobiDBLite consensus disorder prediction 296 316 - -
Cam01g0768 463 MobiDBLite consensus disorder prediction 435 463 - -
Cam01g0768 463 MobiDBLite consensus disorder prediction 368 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0768 Cam-Chr1:8565639 Cam10g1543 Cam-Chr10:29106640 8.80E-24 dispersed
Cam01g0768 Cam-Chr1:8565639 Cam09g2081 Cam-Chr9:35375784 7.70E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g2081 . 1 479 IQD Protein Family AT3G52290 54.2 2.3e-103 372.9
Cam03g1240 . 50 457 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Cam05g1966 . 1 438 IQD Protein Family AT2G26180 61.8 9.1e-121 430.6
Cam01g2409 . 50 323 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Cam07g1020 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cam01g2409 . 50 271 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Cam07g1020 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cam01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Cam06g0278 . 1 509 IQD Protein Family AT4G00820 50.9 2.4e-113 406.4
Cam09g0023 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35