Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0783 ATGAAAGAAAAGCACATTCTGATAATAACATTTTCCTTCAAATGTATTAAACTATCGCCTCCCTCCCTTTTTAATCTCTTTCACGAGAAGAGAAGAAGCCATGGGCAGAATCATGTTAATCTAGGATATTCATTTCATTCCTCATTTTGTAAACCTATTGCTCCATTCTTTCATGATTTGCGTGCACGTTATTTAAAGCTGGAGATGTCAACCCAGCAGCAAAATTCTGATTCGAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACGCAACGCTGGAATTGGAAGAAAGACCAACAGCTCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCATTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGACGAACAAGTCAATACCTTGATGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCAAAATTCTAGCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACCCTTCGAGCAAGAATGGTAGCCATGACAAAAGACAGTATGAGAAACAAGCTACTAGGCATCGCATCGGGCATGCATTTCGTAACAGCCGGGTAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACTTAGCTGTCCGAGATGTGGTGACCAGCGATCCCTATGTAATTCTCACGTTGGGTCATCAATCGGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAACGAGAGCCTAATGTTGTCGATTCCCGAGCATATCCCTCCGCTAAAGCTGCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCATTGGTCGCTGCGACCAAGGCCTATGAGAAATCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAGCTAGAATGCATTCCTCTTACACAATAG 1443 42.69 MKEKHILIITFSFKCIKLSPPSLFNLFHEKRRSHGQNHVNLGYSFHSSFCKPIAPFFHDLRARYLKLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMSMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSQNSSDNSFSKRSSSCSQSSNPSSKNGSHDKRQYEKQATRHRIGHAFRNSRVRRDSDHKSFDKSSPAVSRQASAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILTLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8752286 8765655 + CaPI482276_01g007830.1 Cam01g0783 117865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0783 480 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 322 480 - -
Cam01g0783 480 SMART C2_3c 325 420 IPR000008 -
Cam01g0783 480 Gene3D Arf GTPase activating protein 106 248 IPR038508 -
Cam01g0783 480 MobiDBLite consensus disorder prediction 244 270 - -
Cam01g0783 480 ProSiteProfiles ARF GTPase-activating proteins domain profile. 125 247 IPR001164 GO:0005096(InterPro)
Cam01g0783 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 115 480 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cam01g0783 480 Gene3D C2 domain 323 477 IPR035892 -
Cam01g0783 480 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 321 415 IPR035892 -
Cam01g0783 480 SMART arf_gap_3 125 248 IPR001164 GO:0005096(InterPro)
Cam01g0783 480 CDD C2_ArfGAP 323 467 - -
Cam01g0783 480 PRINTS HIV Rev interacting protein signature 137 156 IPR001164 GO:0005096(InterPro)
Cam01g0783 480 PRINTS HIV Rev interacting protein signature 177 198 IPR001164 GO:0005096(InterPro)
Cam01g0783 480 PRINTS HIV Rev interacting protein signature 156 173 IPR001164 GO:0005096(InterPro)
Cam01g0783 480 MobiDBLite consensus disorder prediction 244 310 - -
Cam01g0783 480 SUPERFAMILY ArfGap/RecO-like zinc finger 125 241 IPR037278 -
Cam01g0783 480 MobiDBLite consensus disorder prediction 292 307 - -
Cam01g0783 480 CDD ArfGap 128 234 - -
Cam01g0783 480 MobiDBLite consensus disorder prediction 271 285 - -
Cam01g0783 480 FunFam stromal membrane-associated protein 1 isoform X1 109 245 - -
Cam01g0783 480 Pfam C2 domain 325 413 IPR000008 -
Cam01g0783 480 ProSiteProfiles C2 domain profile. 305 422 IPR000008 -
Cam01g0783 480 Pfam Putative GTPase activating protein for Arf 126 241 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0783 Cam-Chr1:8752286 Cam05g2872 Cam-Chr5:35714469 1.60E-140 dispersed
Cam01g0783 Cam-Chr1:8752286 Cam01g2572 Cam-Chr1:37364803 1.80E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0783 K12486 - csv:101215531 742.265