Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam01g0824 | ATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTTGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAACATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA | 1335 | 43.15 | MGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDNIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA | 444 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9257334 | 9264108 | + | CaPI482276_01g008240.1 | Cam01g0824 | 117906 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam01g0824 | 444 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 74 | 402 | - | - | |
| Cam01g0824 | 444 | Pfam | V-ATPase subunit C | 73 | 437 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cam01g0824 | 444 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 69 | 443 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
| Cam01g0824 | 444 | FunFam | DNA-directed RNA polymerase II subunit RPB7 | 1 | 72 | - | - | |
| Cam01g0824 | 444 | Gene3D | - | 1 | 73 | IPR012340 | - | |
| Cam01g0824 | 444 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 74 | IPR012340 | - | |
| Cam01g0824 | 444 | CDD | V-ATPase_C | 73 | 441 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cam01g0824 | 444 | Gene3D | - | 231 | 319 | - | - | |
| Cam01g0824 | 444 | Pfam | S1 RNA binding domain | 1 | 62 | IPR003029 | GO:0003676(InterPro) | |
| Cam01g0824 | 444 | Gene3D | - | 109 | 380 | - | - | |
| Cam01g0824 | 444 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 69 | 443 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro) | |
| Cam01g0824 | 444 | FunFam | V-type proton ATPase subunit C | 231 | 319 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam01g0824 | K02148 | - | - | csv:101221574 | 711.449 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cam08g2135 | . | 184 | 1181 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Cam02g2151 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cam02g0507 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 4.3e-292 | 1000.7 | |
| Cam08g1932 | . | 1 | 881 | Primary Pumps ATPases(2) | AT2G28520 | 53.8 | 4.4e-268 | 921.0 | |
| Cam02g0507 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1231.9 | |
| Cam08g1932 | . | 1 | 886 | Primary Pumps ATPases(2) | AT2G21410 | 63.0 | 0.0e+00 | 1091.6 | |
| Cam02g2151 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 2.8e-299 | 1024.6 | |
| Cam02g0507 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.8 | 0.0e+00 | 1233.8 | |
| Cam08g1932 | . | 1 | 886 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 0.0e+00 | 1092.0 | |
| Cam02g2151 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 3.1e-298 | 1021.1 | |
| Cam08g1921 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cam08g1922 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cam11g1596 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cam08g1921 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cam08g1922 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cam11g1596 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cam08g1921 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam08g1922 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam11g1596 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam11g1596 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cam08g1921 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cam08g1922 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cam08g1758 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cam05g1873 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.4 | 2.0e-69 | 259.2 | |
| Cam08g1921 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cam08g1922 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cam11g1596 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cam05g1873 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.5 | 5.2e-72 | 267.7 | |
| Cam08g1758 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cam03g0179 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.5 | 0.0e+00 | 1670.6 | |
| Cam03g0179 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1670.2 | |
| Cam08g2135 | . | 184 | 1181 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Cam03g0179 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.6 | 0.0e+00 | 1318.9 | |
| Cam03g1749 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cam02g0414 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.4e-268 | 920.2 | |
| Cam10g1999 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.7e-37 | 151.0 | |
| Cam01g0824 | . | 69 | 444 | Primary Pumps ATPases(2) | AT1G12840 | 83.8 | 3.8e-182 | 634.4 | |
| Cam09g2252 | . | 1022 | 1282 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.8e-118 | 420.2 | |
| Cam10g1609 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.0e-206 | 715.3 | |
| Cam08g1921 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam08g1922 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam11g1596 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam02g0414 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.8e-270 | 927.5 | |
| Cam05g1548 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.5 | 1.9e-65 | 245.7 | |
| Cam02g0414 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.3e-266 | 912.5 | |
| Cam02g2151 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cam02g0507 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 4.3e-292 | 1000.7 | |
| Cam08g1932 | . | 1 | 881 | Primary Pumps ATPases(2) | AT2G28520 | 53.8 | 4.4e-268 | 921.0 | |
| Cam10g1191 | . | 122 | 463 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Cam05g1548 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 1.2e-90 | 329.7 | |
| Cam09g0163 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Cam02g0414 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.4e-268 | 920.2 | |
| Cam02g0414 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.8e-270 | 927.5 | |
| Cam02g0414 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.3e-266 | 912.5 | |
| Cam01g0824 | . | 69 | 444 | Primary Pumps ATPases(2) | AT1G12840 | 83.8 | 3.8e-182 | 634.4 | |
| Cam09g2252 | . | 1022 | 1282 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.8e-118 | 420.2 | |
| Cam05g1548 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 1.2e-90 | 329.7 | |
| Cam05g1548 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 6.6e-76 | 280.8 | |
| Cam05g1548 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.5 | 1.9e-65 | 245.7 | |
| Cam03g1749 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cam10g1999 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.7e-37 | 151.0 | |
| Cam10g1609 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.0e-206 | 715.3 | |
| Cam02g2151 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cam02g0507 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 4.3e-292 | 1000.7 | |
| Cam08g1932 | . | 1 | 881 | Primary Pumps ATPases(2) | AT2G28520 | 53.8 | 4.4e-268 | 921.0 | |
| Cam02g0507 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1231.9 | |
| Cam08g1932 | . | 1 | 886 | Primary Pumps ATPases(2) | AT2G21410 | 63.0 | 0.0e+00 | 1091.6 | |
| Cam02g2151 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 2.8e-299 | 1024.6 | |
| Cam02g0507 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.8 | 0.0e+00 | 1233.8 | |
| Cam08g1932 | . | 1 | 886 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 0.0e+00 | 1092.0 | |
| Cam02g2151 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 3.1e-298 | 1021.1 | |
| Cam08g1921 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cam08g1922 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cam11g1596 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cam11g1596 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cam08g1921 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cam08g1922 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cam08g1921 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cam08g1922 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cam11g1596 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cam08g1921 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cam08g1922 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cam11g1596 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cam08g1921 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam08g1922 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam11g1596 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cam05g1873 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.5 | 5.2e-72 | 267.7 | |
| Cam08g1758 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cam08g1758 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cam05g1873 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.4 | 2.0e-69 | 259.2 | |
| Cam10g1191 | . | 122 | 463 | Primary Pumps ATPases(2) | AT3G28710 | 95.0 | 2.3e-194 | 674.9 | |
| Cam10g1191 | . | 122 | 463 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Cam03g0179 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.5 | 0.0e+00 | 1670.6 | |
| Cam03g0179 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.6 | 0.0e+00 | 1318.9 | |
| Cam08g2135 | . | 184 | 1181 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Cam03g0179 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1670.2 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007861 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 36 |