Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0824 ATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTTGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAACATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1335 43.15 MGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDNIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9257334 9264108 + CaPI482276_01g008240.1 Cam01g0824 117906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0824 444 Gene3D Vacuolar atp synthase subunit c; domain 1 74 402 - -
Cam01g0824 444 Pfam V-ATPase subunit C 73 437 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam01g0824 444 SUPERFAMILY Vacuolar ATP synthase subunit C 69 443 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Cam01g0824 444 FunFam DNA-directed RNA polymerase II subunit RPB7 1 72 - -
Cam01g0824 444 Gene3D - 1 73 IPR012340 -
Cam01g0824 444 SUPERFAMILY Nucleic acid-binding proteins 1 74 IPR012340 -
Cam01g0824 444 CDD V-ATPase_C 73 441 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam01g0824 444 Gene3D - 231 319 - -
Cam01g0824 444 Pfam S1 RNA binding domain 1 62 IPR003029 GO:0003676(InterPro)
Cam01g0824 444 Gene3D - 109 380 - -
Cam01g0824 444 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 69 443 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
Cam01g0824 444 FunFam V-type proton ATPase subunit C 231 319 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0824 K02148 - csv:101221574 711.449