Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0831 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTGGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGTGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.73 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9388595 9389389 + CaPI482276_01g008310.1 Cam01g0831 117913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0831 264 MobiDBLite consensus disorder prediction 47 62 - -
Cam01g0831 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Cam01g0831 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cam01g0831 264 MobiDBLite consensus disorder prediction 1 44 - -
Cam01g0831 264 MobiDBLite consensus disorder prediction 1 62 - -
Cam01g0831 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0831 Cam-Chr1:9388595 Cam02g1469 Cam-Chr2:27644121 2.50E-76 dispersed
Cam01g0831 Cam-Chr1:9388595 Cam06g1770 Cam-Chr6:28886272 2.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51237 PF03634 TCP 7.90E-32 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0831 K16221 - csv:101214586 389.808