Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0831 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTGGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGTGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.73 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9388595 9389389 + CaPI482276_01g008310.1 Cam01g0831 117913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0831 264 MobiDBLite consensus disorder prediction 47 62 - -
Cam01g0831 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Cam01g0831 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cam01g0831 264 MobiDBLite consensus disorder prediction 1 44 - -
Cam01g0831 264 MobiDBLite consensus disorder prediction 1 62 - -
Cam01g0831 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0831 K16221 - - csv:101214586 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0831 Cam-Chr1:9388595 Cam02g1469 Cam-Chr2:27644121 2.50E-76 dispersed
Cam01g0831 Cam-Chr1:9388595 Cam06g1770 Cam-Chr6:28886272 2.00E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0831 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.1e-68 255.0
Cam02g1469 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cam06g0212 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.4e-66 250.4
Cam05g2637 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cam04g1275 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cam11g1373 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cam11g1373 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cam05g1519 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cam02g1469 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.5e-64 241.5
Cam01g0831 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cam06g1693 . 26 128 TCP Transcription Factor Family AT5G60970 74.0 6.9e-40 161.8
Cam07g1671 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51237 PF03634 TCP 7.90E-32 No_clan Cam TF