Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0843 ATGGAGGGGGAGATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGAGAATAAGATTGTTTGCTTGGTTGGTCTCTGGGCCAAGAACAGAAGTTTCTTGCAAGGTGGTTTTGGAGATTCTATGTGGCAAAGACCGTCTGTGGAGGTATTTCATTGCAATGCCACATCCCATTTTGGTACTCTTGGGCAACTTTGGACTTAA 807 47.09 MEGEMGERGGVVSDCVGFRQRRNLLNYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRENKIVCLVGLWAKNRSFLQGGFGDSMWQRPSVEVFHCNATSHFGTLGQLWT 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9502344 9510230 - CaPI482276_01g008430.1 Cam01g0843 117925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0843 268 CDD B3_DNA 159 238 IPR003340 GO:0003677(InterPro)
Cam01g0843 268 Pfam B3 DNA binding domain 160 222 IPR003340 GO:0003677(InterPro)
Cam01g0843 268 Gene3D - 158 242 IPR015300 -
Cam01g0843 268 SUPERFAMILY DNA-binding pseudobarrel domain 144 220 IPR015300 -
Cam01g0843 268 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 225 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0843 Cam-Chr1:9502344 Cam03g0796 Cam-Chr3:9050713 1.20E-89 dispersed
Cam01g0843 Cam-Chr1:9502344 Cam01g2547 Cam-Chr1:37060138 1.70E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51242 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0843 K14486 - csv:101208098 388.267