Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0872 ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGTGATTCTGAGACGGCAGTGGGAGTGGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGAAAGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTATTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAAAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTGAATGATCTCTTGATCGAGAAGAACAAAGAAACTGGATGGGATACTCCGATTCATGTTGATGCTGCTAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATAAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAAGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCGGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTTCTAAAGGAAGGACTCGAAAGAACAGGGCGGTTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGGTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTCTCTCGCACACTTGCTGAGCGTCTTGTGACGGATATTGAGAAAACGCTGCACGAGCTCGATAGCCTCCCGTCGAGGGCTGATATCAAAACGACGGTGGCCGGAGAAGAGACACAGAAGAACGACGTGGTGGTGGCAAAGAAGAGCGCGCTGGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGGAAAAGAAGAAAACTAATGGAGTTTGTTAG 1500 46.6 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLERTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVTDIEKTLHELDSLPSRADIKTTVAGEETQKNDVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10177470 10187058 + CaPI482276_01g008720.1 Cam01g0872 117954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0872 499 Gene3D - 66 360 IPR015421 -
Cam01g0872 499 Gene3D - 361 448 - -
Cam01g0872 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cam01g0872 499 CDD DOPA_deC_like 59 439 - -
Cam01g0872 499 FunFam Glutamate decarboxylase 66 360 - -
Cam01g0872 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cam01g0872 499 FunFam Glutamate decarboxylase 1 65 - -
Cam01g0872 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cam01g0872 499 Gene3D - 1 65 - -
Cam01g0872 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cam01g0872 499 FunFam Glutamate decarboxylase 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0705 Cam-Chr1:7930392 Cam01g0872 Cam-Chr1:10177470 1.10E-242 dispersed
Cam01g0706 Cam-Chr1:7953822 Cam01g0872 Cam-Chr1:10177470 1.90E-242 dispersed
Cam01g0872 Cam-Chr1:10177470 Cam04g1306 Cam-Chr4:26857470 2.10E-228 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0872 K01580 - csv:101216119 994.571