Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0875 ATGGCGTGCCGGAATCTCCTCCGGCTGTGTTTTTCATCTTTGGTGTTTCTTGTTTTCATATTCTTTCCTGTAGGAGAAGCAGAGGCGGATCTTGCGTCGGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCCGACAAGACTCCATGTTTCTGGCTTGGCGTTACTTGCGGCGGTGGGAGGGTTACTGAACTGCGGCTTCCCGGCGTTGGTCTCGTCGGCCAACTTCCTTTAGGGCTTGGAAATTTAACTCAACTTGAAACCCTGTCTCTTCGCTCTAACATGCTTTCAGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTCCCTCCGGAACCTCTACTTGCAATGGAACTCGTTTTCCGGCGAGATTCCTCCGGTTTTGTTCAGTATTCAGAGTCTTGTTCGCCTGAATTTGGCCCACAACAAGTTCGTCGGTCCGATTTCATTAGGTTTCAATAATCTCACGAACCTACAGGTTCTCAATTTGGAAGAGAATCAACTCGATGGAATTATTCCTGATTTGAACATTCGCTCGCTCAATGCTCTCAATGTTTCTTTCAATCGTCTCAATGGCTCTATCCCTTCGCGATTTTCCGATCAACCAGCCAATGCCTTCGACGGTAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCAACAGCGAGAAGAAGAAATTATCCGCTGGAGCAATCGCCGCAATCATTATCGGAAGTTTGATTGTATTCGTGCTCATCGTTCTGATTTTGATCTTTCTGTGCCGGAAGACGATCAAGATTAATCGGCCGAATGATGGTCAGACGATGGCGACAAGCTCCGGGAGATTGTCGTCGGAGGTTGAGAGTGCAGTTGGCGGAAATAGAGGAGGTGAGAATGAGAGGAATTTGGTGTTCTGTAGGAAAGGAGAAAGTGGGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAGGTATTAGGGAAAGGGAGTTTTGGGTCAACTTACAAGGCAGCTCTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAAGGGTTACTATTATGGCAGAGATGAGAAGCTTCTGCTCTGTGATTATGTCTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTGAAATGGGAAGCAAGGGTTGGCATTGCGCTTGCAGCTGCTCGGGGGATTACGTATCTACATTCTCGACGACCTCCGACCTCTCATGGCAACATAAAGTCTTCAAACATTCTCCTCAACAGATCCCATACAGCTTGTGTCTCTGACTTTGGTCTCATTCAGATTGCAAGTCCTACATCCACTCCAAACCATGTTGCAACCTACCGCGCCCCTGAAGTCACCGATCCTCGTAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTGTGGTAATTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGGCAATGCTCAATGACGATGGCGTAGACCTCCCACGATGGGTGCACTCGAAGATCGAAGAGGAGAAGACTGCTGAAGTGTTCGATGAGGAGCTATTAGAATGCAAGAATGGCTTGGATGAAATGGTGCAACTTCTGCAACTTGCCATGTTATGTACAGCACCACACCCGGATAGTCGACCTACGATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCATTCTATCTTACTGAAAGAACAAGATACGAGCATCGACAAGTTTTATGATGTGGACAGTACTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGATTCCTCTTCCACCTTCGATCTAG 1905 47.14 MACRNLLRLCFSSLVFLVFIFFPVGEAEADLASDTAALVALQKAMGVLSRTRYWNLSDKTPCFWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPVLFSIQSLVRLNLAHNKFVGPISLGFNNLTNLQVLNLEENQLDGIIPDLNIRSLNALNVSFNRLNGSIPSRFSDQPANAFDGNSLCGKPLSPCNSEKKKLSAGAIAAIIIGSLIVFVLIVLILIFLCRKTIKINRPNDGQTMATSSGRLSSEVESAVGGNRGGENERNLVFCRKGESGFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLCDYVSMGSLSVHLHGNKDPSRTSLKWEARVGIALAAARGITYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPTSTPNHVATYRAPEVTDPRKVSLKADVYSFGVVILELLTGKAPNSAMLNDDGVDLPRWVHSKIEEEKTAEVFDEELLECKNGLDEMVQLLQLAMLCTAPHPDSRPTMAKVTSRIDEIYHSILLKEQDTSIDKFYDVDSTVSQQFYSADSIMIPLPPSI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10246795 10249187 + CaPI482276_01g008750.1 Cam01g0875 117957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0875 634 SMART LRR_typ_2 95 118 IPR003591 -
Cam01g0875 634 SMART LRR_typ_2 119 143 IPR003591 -
Cam01g0875 634 SMART LRR_typ_2 167 190 IPR003591 -
Cam01g0875 634 Pfam Protein tyrosine and serine/threonine kinase 328 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g0875 634 PANTHER OS05G0588300 PROTEIN 11 596 IPR050994 -
Cam01g0875 634 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cam01g0875 634 Gene3D Ribonuclease Inhibitor 144 231 IPR032675 -
Cam01g0875 634 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Cam01g0875 634 SUPERFAMILY L domain-like 50 212 - -
Cam01g0875 634 FunFam pollen receptor-like kinase 1 293 398 - -
Cam01g0875 634 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0875 634 FunFam Probable inactive receptor kinase RLK902 31 188 - -
Cam01g0875 634 Gene3D Phosphorylase Kinase; domain 1 292 398 - -
Cam01g0875 634 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524(InterPro)
Cam01g0875 634 SUPERFAMILY Protein kinase-like (PK-like) 328 588 IPR011009 -
Cam01g0875 634 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515(InterPro)
Cam01g0875 634 Pfam Leucine Rich Repeat 169 186 IPR001611 GO:0005515(InterPro)
Cam01g0875 634 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Cam01g0875 634 Gene3D Transferase(Phosphotransferase) domain 1 399 603 - -
Cam01g0875 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0875 Cam-Chr1:10246795 Cam05g1297 Cam-Chr5:13251721 1.10E-136 dispersed
Cam01g0875 Cam-Chr1:10246795 Cam04g1076 Cam-Chr4:24924712 1.30E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84869 PF07714 PK_Tyr_Ser-Thr 1.50E-35 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0875 - - - 0.0