Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0918 ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCGTCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCTATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA 522 51.15 MKTENGRKQGGGTGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11049670 11053211 + CaPI482276_01g009180.1 Cam01g0918 118000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0918 173 MobiDBLite consensus disorder prediction 130 155 - -
Cam01g0918 173 Coils Coil 97 124 - -
Cam01g0918 173 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
Cam01g0918 173 MobiDBLite consensus disorder prediction 130 153 - -
Cam01g0918 173 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Cam01g0918 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0918 Cam-Chr1:11049670 Cam07g0466 Cam-Chr7:6456415 4.00E-46 dispersed
Cam01g0918 Cam-Chr1:11049670 Cam02g1919 Cam-Chr2:32276117 3.00E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51248 PF03195 LOB 2.50E-43 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0918 - - - 0.0