Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0941 ATGGCCGCAAAAGATGCAGAGCAAGTCTTGGACGTGCAGTCGGTTGTCGAAGCAGTAGTTGCAAACGAAGACGCCGATGTTCCTAGCTACGAAGTAGAAAGCCTCTGCATGCGTTGCGGCGAAAACGGGACAACAAGATTTTTATTAACTTTAATTCCGCACTTCAGAAAGATCTTGTTGTCAGCCTTTGAATGTCTACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAGGCGACCAGAAGATGCTCAATCGACAAGTGGTAAAATCTGAATCTGCCATTATTAAGATCCCAGAATTGGATTTTGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTGGGATTTGTTAG 408 45.83 MAAKDAEQVLDVQSVVEAVVANEDADVPSYEVESLCMRCGENGTTRFLLTLIPHFRKILLSAFECLHCGERNNEVQFAGEIQPRGCCYCLEVHAGDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTGIC 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11699428 11707435 + CaPI482276_01g009410.1 Cam01g0941 118023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0941 135 Gene3D ZPR1, A/B domain 80 133 IPR042451 -
Cam01g0941 135 PANTHER ZINC FINGER PROTEIN ZPR1 7 132 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cam01g0941 135 SMART zpr1 34 135 IPR004457 GO:0008270(InterPro)
Cam01g0941 135 Pfam ZPR1 jelly-roll domain 99 132 - -
Cam01g0941 135 FunFam Zinc finger protein ZPR1 24 79 - -
Cam01g0941 135 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Cam01g0941 135 Pfam ZPR1 zinc-finger domain 31 83 IPR004457 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0941 Cam-Chr1:11699428 Cam01g0942 Cam-Chr1:11707735 4.70E-10 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0941 K06874 - csv:101208000 253.447