Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0942 ATGGAGCAAGGAGCAACAAGGCAAGTGGAAGGTATATTGGTACGAGCCACAGATGAATTAGAAGCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTGAAACTGAAAGCTTGTGCCATGGGAGATTCATCATTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCAGCTAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTGGGTTATTACGTTGAAACATCACAACCAGCAGAAGCTGAGGATGGAGCATCAACAGGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAACGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCTTGTGCAGTTAGGTGTGAGACTCGAATGTTTGTAACCAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGAGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTGAAGGATGTTAGAGATCTCAGTCGAGATGTGATAAAGTCAGATACTGCAAGTGTAAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACAACTGTCGAAGGTTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAGAAGAAACAAATGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCTTGGACTCTCATCCTTGATGATGCACTAGCAAATTCGTTTATTGCACCAGTGACTGATGATATGAAAGATGACCATCAGTTAACATGCGAGGAATACGAGAGATCCTGGGAACAGAATGAGGAACTTGGTTTGAACGACATGGACACTTCGGCCGCTGATGCTGCATATAATTAA 1101 43.69 MEQGATRQVEGILVRATDELEALQEERRKVDPQTAEAIDQFLLKLKACAMGDSSFSFILDDPAGNSFIENPFAPAKDPSLSIKFYERTPEQQASLGYYVETSQPAEAEDGASTGGVDASNQVRGEAHGSVGATAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVRCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKDVRDLSRDVIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENRRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTCEEYERSWEQNEELGLNDMDTSAADAAYN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11707735 11722429 + CaPI482276_01g009420.1 Cam01g0942 118024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0942 366 Gene3D ZPR1, A/B domain 211 353 IPR042451 -
Cam01g0942 366 Gene3D ZPR1, A/B domain 1 97 IPR042451 -
Cam01g0942 366 Gene3D ZPR1, zinc finger domain 155 210 IPR042452 -
Cam01g0942 366 NCBIfam ZPR1 zinc finger domain 166 357 IPR004457 GO:0008270(InterPro)
Cam01g0942 366 FunFam Zinc finger protein ZPR1 156 210 - -
Cam01g0942 366 Coils Coil 6 26 - -
Cam01g0942 366 Pfam ZPR1 jelly-roll domain 228 353 - -
Cam01g0942 366 Pfam ZPR1 jelly-roll domain 3 97 - -
Cam01g0942 366 FunFam Zinc finger protein ZPR1 211 353 - -
Cam01g0942 366 PANTHER ZINC FINGER PROTEIN ZPR1 3 363 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cam01g0942 366 SMART zpr1 165 325 IPR004457 GO:0008270(InterPro)
Cam01g0942 366 Pfam ZPR1 zinc-finger domain 159 214 IPR004457 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0941 Cam-Chr1:11699428 Cam01g0942 Cam-Chr1:11707735 4.70E-10 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0942 K06874 - csv:101208000 674.085