Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam01g0950 | ATGGTTGCTTTCTCATATTCATCACCTCATTCCAATGGAGATCCAAAGGCAATAGAAAAGATTAAGAACCAAAAGACAATAATTTATCCCAATGGTTTCAACATCACATGGGGCAACGACAACCGTTATTGGCGCTTACCTCGTCAATCTCGTAACTTGAAGGAGTCGAGTGCAGCAGCAGAGTTACTACAAGTGTCATGGTTCGAGGTGACATGTTCAACAGACAATGTGGATGTCGGAAAAAGCTACAGAGTTGGGTTCAACCTATCCATGACAGTCGCAGCTTTTGGCTGGAAAGGATGTGAAGTTTACATAATGGCCAAGATTGGGAAGGCAGGGAAATTTGTGTACAAGAAGGTGTGTCTTGACACTCGATGCTCTGATCAGAACAAGTTCAATATGCCGGAAGATGATCTAATTATCACCGTGAACCCTCCGCCGAGCTTACCGGGAGACAACCGTCTCTACTTTGGAATGTACGAGGTTTGGAGTGGGAGATGGAAGGGAGGACTCAAAATCCACCATGCATTTGTCGAGAAGGTTGGAAACTAG | 552 | 44.75 | MVAFSYSSPHSNGDPKAIEKIKNQKTIIYPNGFNITWGNDNRYWRLPRQSRNLKESSAAAELLQVSWFEVTCSTDNVDVGKSYRVGFNLSMTVAAFGWKGCEVYIMAKIGKAGKFVYKKVCLDTRCSDQNKFNMPEDDLIITVNPPPSLPGDNRLYFGMYEVWSGRWKGGLKIHHAFVEKVGN | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12142351 | 12143589 | + | CaPI482276_01g009500.1 | Cam01g0950 | 118032 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam01g0950 | 183 | Pfam | Phloem protein 2 | 26 | 175 | IPR025886 | - | |
| Cam01g0950 | 183 | PANTHER | F-BOX DOMAIN-CONTAINING PROTEIN | 24 | 176 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g0945 | Cam-Chr1:11782041 | Cam01g0950 | Cam-Chr1:12142351 | 5.50E-44 | dispersed | |
| Cam01g0950 | Cam-Chr1:12142351 | Cam01g2643 | Cam-Chr1:37939724 | 5.90E-32 | dispersed | |
| Cam01g0948 | Cam-Chr1:12031041 | Cam01g0950 | Cam-Chr1:12142351 | 7.70E-88 | proximal | |
| Cam01g0950 | Cam-Chr1:12142351 | Cam01g0951 | Cam-Chr1:12187221 | 4.40E-59 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam01g0950 | - | - | - | 0.0 |