Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1057 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGTGCAATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACTTTCCTCCGTGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATGGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 657 47.18 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTMVDINKRMGLLTAKQPPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNNAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15317010 15317666 + CaPI482276_01g010570.1 Cam01g1057 118139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1057 218 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cam01g1057 218 Coils Coil 87 114 - -
Cam01g1057 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam01g1057 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cam01g1057 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1057 Cam-Chr1:15317010 Cam03g1800 Cam-Chr3:33115617 1.20E-63 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0979 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cam03g1800 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 5.2e-55 211.8
Cam01g1057 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cam10g0979 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cam03g1800 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 5.2e-55 211.8
Cam01g1057 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cam10g0979 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cam03g1800 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 5.2e-55 211.8
Cam01g1057 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cam10g0979 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cam03g1800 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 5.2e-55 211.8
Cam01g1057 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51252 PF00319 SRF-TF 4.50E-17 No_clan Cam TF