Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1057 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGTGCAATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACTTTCCTCCGTGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATGGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 657 47.18 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTMVDINKRMGLLTAKQPPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNNAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15317010 15317666 + CaPI482276_01g010570.1 Cam01g1057 118139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1057 218 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cam01g1057 218 Coils Coil 87 114 - -
Cam01g1057 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam01g1057 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cam01g1057 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1057 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1057 Cam-Chr1:15317010 Cam03g1800 Cam-Chr3:33115617 1.20E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51252 PF00319 SRF-TF 4.50E-17 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1057 - - - 0.0