Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1059 ATGGCCATCTCCATTGCCTTCTCGACGAACACCCACTTCCCATTTTCTACAATTTGCAGATCAATTTCCTCTCTCAGTCCATCCGTCGATGTCCTTTTTAACGCCAGGAGAGATTGCAATCGTGGGTTTCCTTTAATTAGAACATTGGACACCAAATTGGCAAAAACCAGGGCTGCATTGTCTGAAATTTCTTACCGCAAGCAGTACCCAAAAGTGGGTGCCAAATCTATTGGACCCATTCCACCTGCCCAGCTAATTCAAGTCGTTGAGAATGCTGCCAAGACAGGAGCCGAGGTGGTGATGGATGCTGTTAATAAGCCTCGGAATATTGAATATAAAGGATTGGCGGACTTAGTAACGGAAACAGATAAAATGAGTGAGGCTGCTATTCTGGAAGTCGTTAGAAAGAACTTTAGAGATCACCTCATCCTTGGAGAAGAGGGAGGAGTTATAGGGGATTCATCATCTGATTATCTTTGGTGCATTGATCCTTTAGATGGAACAACAAATTTTGCACATGGCTATCCTTCCTTTGCAGTATCTGTCGGAGTTTTATTTCGGGGAAATCCTGCTGCTGCAGCTGTGGTAGAGTTTGTTGGGGGTCCTATGTGCTGGAACACTCGCATATTTACTGCAACTGCTGGTGGGGGAGCATTCTGTAATGGCCAAAAGATTAATGTGAGTCAAACTAGCCAGGTGGAACGATCTCTTCTAGTTACAGGATTTGGATACGAACATGATGATCCATGGGCTACAAATATGGATTTATTTAAAGAATTCACAGATGTCAGCAGGGGAGTAAGAAGGCTCGGTGCAGCAGCAGTCGACATGAGCCATGTAGCTCTAGGAATTGTAGAAGCATATTGGGAGTATCGCCTGAAGCCATGGGATATGGCTGCAGGTGTTTTGATAGTTGAAGAAGCAGGTGGAGCAGTGACTCGCATGGATGGTGGAAAGTTCAGTGTCTTTGATAGATCTGTTTTGGTTTCTAATGGTGTTGTACATGACAAGCTTTTGGAGAAAATTGGTTGTGCAACCGAAAAACTAAAAAGCAAAGGAATTGATTTCTCATTGTGGTATAAACCAGAAAACTACCAGACAGATCTTTGA 1110 43.6 MAISIAFSTNTHFPFSTICRSISSLSPSVDVLFNARRDCNRGFPLIRTLDTKLAKTRAALSEISYRKQYPKVGAKSIGPIPPAQLIQVVENAAKTGAEVVMDAVNKPRNIEYKGLADLVTETDKMSEAAILEVVRKNFRDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFRGNPAAAAVVEFVGGPMCWNTRIFTATAGGGAFCNGQKINVSQTSQVERSLLVTGFGYEHDDPWATNMDLFKEFTDVSRGVRRLGAAAVDMSHVALGIVEAYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSVLVSNGVVHDKLLEKIGCATEKLKSKGIDFSLWYKPENYQTDL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15353732 15361620 - CaPI482276_01g010590.1 Cam01g1059 118141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1059 369 Gene3D - 83 225 - -
Cam01g1059 369 FunFam Inositol-1-monophosphatase 226 355 - -
Cam01g1059 369 SUPERFAMILY Carbohydrate phosphatase 84 342 - -
Cam01g1059 369 Gene3D - 226 349 - -
Cam01g1059 369 PRINTS Inositol monophosphatase superfamily signature 117 137 IPR000760 -
Cam01g1059 369 PRINTS Inositol monophosphatase superfamily signature 215 238 IPR000760 -
Cam01g1059 369 PRINTS Inositol monophosphatase superfamily signature 293 317 IPR000760 -
Cam01g1059 369 PRINTS Inositol monophosphatase superfamily signature 262 283 IPR000760 -
Cam01g1059 369 PRINTS Inositol monophosphatase superfamily signature 139 155 IPR000760 -
Cam01g1059 369 PRINTS Inositol monophosphatase superfamily signature 160 176 IPR000760 -
Cam01g1059 369 ProSitePatterns Inositol monophosphatase family signature 2. 296 310 IPR020550 GO:0046854(InterPro)
Cam01g1059 369 FunFam Inositol-1-monophosphatase 82 225 - -
Cam01g1059 369 ProSitePatterns Inositol monophosphatase family signature 1. 160 173 IPR020583 -
Cam01g1059 369 PANTHER INOSITOL MONOPHOSPHATASE 84 344 - GO:0006020(PANTHER)|GO:0007165(PANTHER)|GO:0008934(PANTHER)|GO:0046855(PANTHER)
Cam01g1059 369 CDD IMPase 85 331 IPR033942 GO:0008934(InterPro)
Cam01g1059 369 Pfam Inositol monophosphatase family 84 342 IPR000760 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1059 K01092 - - csv:101218450 697.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1059 Cam-Chr1:15353732 Cam01g1081 Cam-Chr1:15970189 1.30E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g60 Blo01g00448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0914 Cone19ag0910 Cone6ag0541 Cone9ag0551 . . . . . . . . . . Bma01g00117 Bma06g00731 . . . . . . . . Cpe07g00080 . . . . . . . Cla01g01022 Cam01g1059 . Cco01g1115 Clacu01g1050 Cmu01g1004 Cre01g0946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011090 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31