Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1110 ATGGCTGCTGGTGGTGATTTCTTGCCCCCCTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCACTAGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCCACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGCTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCGAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGACAGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTGGCTATCTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATACGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGCGGCGGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAAAATCATCTTACTCCAGCCAGGACTCTGTGCTTACAATTCCATCGAGGGTCTAGGAATTGTGCACTATTGTACTGCTTGCATAGCTATAGAGTTGACACTGTGA 1212 46.78 MAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMAAAAEAKLDDCNNKDLEEQSYVVSNATILHKIILLQPGLCAYNSIEGLGIVHYCTACIAIELTL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16888676 16892198 + CaPI482276_01g011100.1 Cam01g1110 118192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1110 403 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Cam01g1110 403 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020(InterPro)
Cam01g1110 403 PANTHER WAT1-RELATED PROTEIN 11 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cam01g1110 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 328 - -
Cam01g1110 403 Coils Coil 333 353 - -
Cam01g1110 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1110 Cam-Chr1:16888676 Cam02g1534 Cam-Chr2:28309157 1.60E-117 dispersed
Cam01g1110 Cam-Chr1:16888676 Cam04g0584 Cam-Chr4:19635777 3.00E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1110 - - - 0.0