Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1125 ATGTGCATTCTCTTGATCTTTCTCTGTAATGGGACCCCTTTTGCCATTTCCGATCATTATCGAATTAGTGTTCTTGGGTTTGATCCTTTCGAAGTGGATCGTTCATGCAGCGGATTGATTTCGTGTAGTGGGTTGCGGGAAAATGGTGGCTTGTTCATGGCGAGTGGCATTGACATGTGTAATGTGCCTGAGGAAGGGTATGTTTCGCCAGTTTCTGCCTGTGGATTAGTATCATGTGATGGAATTTTTATGTTGAAGAGCTTTATTGATTTTCTGATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCTCTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTAACCGTCATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATATCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGGGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATTCCATTTACTTTTGTGTTGTAACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAGCTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTTATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATATGGGGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTTGACATTGATCAATCAGGAAACGATAACTCTTGTAGAGCATTGGATGAGGTCGTCCTGCGACATAATCTAGAATCCCTTCACCTGCTCTTACACCATGAACTTCGGTTCCAACTTGGAAACCGCCTCCAAAGGCGACCATTGCCACCAAGAGTACGGCTGTGGAGGCAAAGAGAGGCCAAAAGAAAGCTAGAATACTTAGAAACCGAGGAGCTGCATATACAAACAATGACAGAACCACTGAAACTGCTGCTACAACAGTTATTTGGTCTTTGTGTTGGAGAACCTTTGTTTGAATGTCCATGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGTAGAGAGAGAGAAAACAGAGAGGAATTTGCTATAAGTGATGATGATTCCTATGAGTCTCTCCTTTTCTGGTAA 1656 41.61 MCILLIFLCNGTPFAISDHYRISVLGFDPFEVDRSCSGLISCSGLRENGGLFMASGIDMCNVPEEGYVSPVSACGLVSCDGIFMLKSFIDFLMDSGDVEQSLLPKLSDSDKRKSLQRRKSNRHGSFSHSVENNNQPQNYDVISHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDSIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGALFLTVVEKLEFIDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGNDNSCRALDEVVLRHNLESLHLLLHHELRFQLGNRLQRRPLPPRVRLWRQREAKRKLEYLETEELHIQTMTEPLKLLLQQLFGLCVGEPLFECPWRRRRRRRRRSRERENREEFAISDDDSYESLLFW 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17122362 17125930 + CaPI482276_01g011250.1 Cam01g1125 118207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1125 551 Gene3D - 250 364 - -
Cam01g1125 551 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 152 406 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cam01g1125 551 SUPERFAMILY Voltage-gated potassium channels 271 368 - -
Cam01g1125 551 MobiDBLite consensus disorder prediction 109 133 - -
Cam01g1125 551 SUPERFAMILY EF-hand 365 423 IPR011992 -
Cam01g1125 551 Pfam Ion channel 160 240 IPR013099 -
Cam01g1125 551 Pfam Ion channel 284 352 IPR013099 -
Cam01g1125 551 SUPERFAMILY Voltage-gated potassium channels 150 254 - -
Cam01g1125 551 Gene3D - 149 245 - -
Cam01g1125 551 PRINTS Two pore domain K+ channel signature 196 224 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cam01g1125 551 PRINTS Two pore domain K+ channel signature 313 322 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1125 Cam-Chr1:17122362 Cam09g2155 Cam-Chr9:36084890 8.40E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1125 K05389 - csv:101214791 611.683