Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1161 ATGGCCTCAAAGAGTTCGAAGCCTTCTGTAAAGCAACCTAAGGGGATAATTGGCGTTCAAGCTACGGATTCAGGTGATCTAAAGTCCTTACCTTCACAGACTTCATTGGGAAACAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAACTCTACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAAGAGCAAATCCTCAAGTTTAAATCCTAAAGAGTCTACCGAGTCTTGTAATCAGAAAGTCAAAGAAAATTCCTCAAAGTCTGGCTCTAAGACGTTGACAGAAGGAGATCCTGCTCCTGCTCTTAGCGGGACTCGGGGCTTAGCAGAGGACTCTATAGATCCTGAGAACAAAACATCGGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTGCCAAGACTAGTGGAAGTGCGAAAATTAGCGACCGTGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGAGGAAGCACTAGCAGTGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATCGGAAGCGTCTACTTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGCCGAAAGAAGTTGCTTCGAGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAGACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTCCCGAGCAGGCGGTGAAATTTTATGTAGCAGAGGTTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCGGACTTTGATCTTTCATTAAGATGTGCAGTTAGTCCAACATTAGTGAAGGGTTCATGTTCTGAGTCTGAACCCTTGAGAAAGAATTCAGCTTATTGTGTTCAACCGGCTTGTATCGAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCTACGACATGCTTCTCTCCCCGACTTTTCTCTAGCAAATCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTCATTGCAGAGCCCACGGAGGCGAGATCAATGTCATTTGTTGGTACACACGAGTATTTGGCACCGGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAACATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAGCAACATCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGTTGCGCTTCGCCACCAGAAGTACCAAAGCCTGTTGAGATTGAGAGGATACCCTCACCAGCACCTCCAGCGAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCCGATTCCAAATCGTCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1842 44.95 MASKSSKPSVKQPKGIIGVQATDSGDLKSLPSQTSLGNKIGSVISGDVLNSTQKSLNQSTLIDSSKSKSSSLNPKESTESCNQKVKENSSKSGSKTLTEGDPAPALSGTRGLAEDSIDPENKTSECGSGKDSSVSAKVSDGTNSIAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPASGKAVMARPGPDSKSSDNYLEFDFF 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18174418 18176729 - CaPI482276_01g011610.1 Cam01g1161 118243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1161 613 SUPERFAMILY Protein kinase-like (PK-like) 195 584 IPR011009 -
Cam01g1161 613 FunFam Serine/threonine-protein kinase D6PK-like 217 302 - -
Cam01g1161 613 Gene3D Phosphorylase Kinase; domain 1 217 302 - -
Cam01g1161 613 ProSiteProfiles Protein kinase domain profile. 219 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1161 613 FunFam Serine/threonine-protein kinase AGC1-7 449 574 - -
Cam01g1161 613 SMART serkin_6 219 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1161 613 MobiDBLite consensus disorder prediction 56 176 - -
Cam01g1161 613 MobiDBLite consensus disorder prediction 1 41 - -
Cam01g1161 613 MobiDBLite consensus disorder prediction 25 41 - -
Cam01g1161 613 Gene3D Transferase(Phosphotransferase) domain 1 450 574 - -
Cam01g1161 613 FunFam serine/threonine-protein kinase D6PK-like 303 370 - -
Cam01g1161 613 Pfam Protein kinase domain 220 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1161 613 Pfam Protein kinase domain 453 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1161 613 CDD STKc_phototropin_like 218 579 - -
Cam01g1161 613 MobiDBLite consensus disorder prediction 56 97 - -
Cam01g1161 613 Gene3D Transferase(Phosphotransferase) domain 1 303 371 - -
Cam01g1161 613 MobiDBLite consensus disorder prediction 126 151 - -
Cam01g1161 613 PANTHER FLIPPASE KINASE 1-RELATED 84 576 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g1161 613 MobiDBLite consensus disorder prediction 581 606 - -
Cam01g1161 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1161 Cam-Chr1:18174418 Cam02g2273 Cam-Chr2:35358595 6.60E-152 dispersed
Cam05g0015 Cam-Chr5:621851 Cam01g1161 Cam-Chr1:18174418 9.50E-190 transposed
Cam10g1296 Cam-Chr10:26438098 Cam01g1161 Cam-Chr1:18174418 1.20E-198 transposed
Cam01g1161 Cam-Chr1:18174418 Cam01g2175 Cam-Chr1:34435293 6.90E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84872 PF00069 Pkinase 9.50E-37 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1161 K08286 - csv:101213662 1092.8