Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1289 | ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGATTTTTTTGTGTCGTCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGGAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAATAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGTAACAAAACATTCTCCGACTGTTGGATCGTGCAAGGAGAAATTATTTGGGAGATCGGAACAATGTGGTTGCCATGCATCCAAGAGTGTTAGGATGAGACAATTTTGCATTGTGATGGTCACGTTGAATAGTCTTTCTGAGAAGCTCAAGCGGTAA | 1026 | 41.91 | MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHDFFVSSRCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEISCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCVTKHSPTVGSCKEKLFGRSEQCGCHASKSVRMRQFCIVMVTLNSLSEKLKR | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23353760 | 23356354 | + | CaPI482276_01g012890.1 | Cam01g1289 | 118371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1289 | 341 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 186 | 206 | IPR013087 | - | |
Cam01g1289 | 341 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 184 | 211 | IPR013087 | - | |
Cam01g1289 | 341 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 267 | 290 | - | - | |
Cam01g1289 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 170 | 207 | IPR036236 | - | |
Cam01g1289 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 253 | 298 | IPR036236 | - | |
Cam01g1289 | 341 | Coils | Coil | 107 | 127 | - | - | |
Cam01g1289 | 341 | Gene3D | Classic Zinc Finger | 183 | 206 | - | - | |
Cam01g1289 | 341 | PANTHER | ZINC FINGER PROTEIN WIP2 | 27 | 292 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cam01g1289 | 341 | SMART | c2h2final6 | 231 | 263 | IPR013087 | - | |
Cam01g1289 | 341 | SMART | c2h2final6 | 184 | 206 | IPR013087 | - | |
Cam01g1289 | 341 | SMART | c2h2final6 | 268 | 294 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1289 | Cam-Chr1:23353760 | Cam04g0087 | Cam-Chr4:2650758 | 6.90E-66 | dispersed | |
Cam01g1289 | Cam-Chr1:23353760 | Cam02g2408 | Cam-Chr2:36548527 | 3.10E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51259 | None | None | None | None | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1289 | - | - | - | 0.0 |