Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1343 ATGTCTCGCCGAGGCAGTGGTGGGGGCGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAGCCGTCTCCGGCTATATCTCGCGGCGGCGGTGGCAGAGGCGGCGGTGGAAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCGGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTAGTCCGGTTGCTTCCCCTCCTCCTCCACAGACTTCTACGGGAGCATCTTCTTCATCCTCGTCAGGTACTGCTGCTCACTCACAGCCCGAGGTTTCGAGGATCGAGGCACAAGTGGAGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAGAGGCCGGGATATGGAACCATTGGGGACAAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCAACAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTTGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCGCAGGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCAGGTGAACTGGGTAATGGTGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCTAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTGAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTCCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTGGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTTGATCCAAGGATGGGTCAATGGAATATGATCAATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGAATTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAGGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACACACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCGGTCTGTAAAAAGTCTGGGAGCCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAATACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATCGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGCGCGGGAATGATTAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACCGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCACGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCCGACAGCGGTTCGACGAGTTCAGGTGGTGGGAATGTAGAGATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTTTTACTGTTGA 2925 44.65 MSRRGSGGGGGGRGSGGRGGQPSPAISRGGGGRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPSPVASPPPPQTSTGASSSSSSGTAAHSQPEVSRIEAQVEKMTLTPQKVPPSSSKDLAVAKRPGYGTIGDKVVVRANHFLVHVADKDLYHYDVSITPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPTRKEREFKVSIKFASKPDLHHLQQFLHGRQRDAPQETIQVLDVVLRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVHTAHANQIDGVLRDIHSRSVKSLGAQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26058223 26065539 + CaPI482276_01g013430.1 Cam01g1343 118425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1343 974 Pfam Piwi domain 624 938 IPR003165 GO:0003676(InterPro)
Cam01g1343 974 SUPERFAMILY Ribonuclease H-like 618 940 IPR012337 -
Cam01g1343 974 Gene3D - 511 686 - -
Cam01g1343 974 ProSiteProfiles Piwi domain profile. 623 939 IPR003165 GO:0003676(InterPro)
Cam01g1343 974 Pfam Mid domain of argonaute 530 607 IPR032473 -
Cam01g1343 974 SMART DUF1785_2 281 333 IPR014811 -
Cam01g1343 974 MobiDBLite consensus disorder prediction 1 98 - -
Cam01g1343 974 FunFam Argonaute 10 511 685 - -
Cam01g1343 974 CDD Piwi_ago-like 491 938 IPR045246 -
Cam01g1343 974 Gene3D paz domain 328 451 - -
Cam01g1343 974 Pfam N-terminal domain of argonaute 136 272 IPR032474 -
Cam01g1343 974 MobiDBLite consensus disorder prediction 76 96 - -
Cam01g1343 974 Gene3D - 691 974 IPR036397 GO:0003676(InterPro)
Cam01g1343 974 Pfam PAZ domain 357 464 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam01g1343 974 SUPERFAMILY PAZ domain 330 487 IPR036085 GO:0005515(InterPro)
Cam01g1343 974 CDD PAZ_argonaute_like 333 446 - -
Cam01g1343 974 ProSiteProfiles PAZ domain profile. 335 447 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam01g1343 974 Pfam Argonaute linker 2 domain 473 519 IPR032472 -
Cam01g1343 974 Pfam Argonaute linker 1 domain 283 332 IPR014811 -
Cam01g1343 974 SMART Piwi_a_2 623 939 IPR003165 GO:0003676(InterPro)
Cam01g1343 974 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 127 960 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cam01g1343 974 SMART PAZ_2_a_3 336 469 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam01g1343 974 FunFam protein argonaute 10-like 691 974 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1343 Cam-Chr1:26058223 Cam04g1291 Cam-Chr4:26720581 9.40E-302 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1343 K11593 - csv:116403995 1647.1