Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1344 ATGGCGCTCTCTCTATCCCTACAACTCATCCGTTTCCCTCCTCAACCATTATCCTCATCCTCTCAACATCTTCTCATCTCTGACCTCGCCTCCGTCTCGCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCGCGGAGCTACACGATGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGCGAATCGGAAGCGTTGGTGTCCGATGTGGACGGAGGGGGAGATCTTGAGGATGATATTGATATTGGTGTTCAGGAAGACAGCTCTGTGGCCACTGCTGCTTCTGCGCAGAAAAATTCTGCCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATCCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGATGATGGAACCGTATCTACCAGGAAGGTTAACAGACGGCAACTATTGAAGTCAAGTGGGCTTCGTCCACGTGATATCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAACATGCTATTTTGCTTAATCTGGGATCATTGAGAGCAATAGCTATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACATTGGTTGAATTAGGGTCCAGGGCAGGGGCTCTTAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCGGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTGGAGTTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTAGACAGGAGAATCCTGTAGCTAAGTACTTGTTCAGGTCATTCAACACTCAATCTTGGAGGGGCTGCTATATCCCAGTGATGAGGATGCAAATTGTGAAGGCTGCATATATTATTAGGCCATGCGCCAATATTGGCACAATCACTCAGTTTGGTTTATGA 1467 45.26 MALSLSLQLIRFPPQPLSSSSQHLLISDLASVSRFFRSPCLSSLAPSRSYTMKLSSRTKCFSMSTEEEQWSESEALVSDVDGGGDLEDDIDIGVQEDSSVATAASAQKNSASSPSDYLSLAIREQVYEVLEVKDDGTVSTRKVNRRQLLKSSGLRPRDIRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIRQENPVAKYLFRSFNTQSWRGCYIPVMRMQIVKAAYIIRPCANIGTITQFGL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26089090 26098503 + CaPI482276_01g013440.1 Cam01g1344 118426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1344 488 Gene3D Magnesium transport protein CorA, transmembrane region 206 387 - -
Cam01g1344 488 CDD Mrs2_Mfm1p-like 129 436 IPR039204 -
Cam01g1344 488 Gene3D - 119 203 - -
Cam01g1344 488 Coils Coil 336 356 - -
Cam01g1344 488 FunFam Magnesium transporter MRS2-11, chloroplastic 205 387 - -
Cam01g1344 488 FunFam Magnesium transporter MRS2-11, chloroplastic 122 203 - -
Cam01g1344 488 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 102 436 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cam01g1344 488 Pfam Magnesium transporter MRS2-like 132 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1344 K16075 - - csv:101219314 722.62
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1389 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cam08g1494 . 6 380 MRS2 Gene Family AT1G16010 52.4 3.6e-107 385.6
Cam06g0667 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cam07g0060 . 715 1086 MRS2 Gene Family AT5G64560 68.9 1.4e-131 466.5
Cam02g0728 . 14 495 MRS2 Gene Family AT3G19640 64.4 2.3e-155 545.8
Cam05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.6 3.4e-142 501.9
Cam02g0026 . 59 442 MRS2 Gene Family AT3G58970 69.7 3.2e-140 495.4
Cam08g1494 . 6 380 MRS2 Gene Family AT2G03620 68.1 2.1e-136 482.6
Cam10g1389 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cam05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.1 2.3e-92 336.3
Cam06g0667 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cam07g0060 . 715 1048 MRS2 Gene Family AT5G09690 63.9 1.8e-108 389.4
Cam10g1389 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cam06g0667 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cam07g0060 . 750 1008 MRS2 Gene Family AT5G09720 61.7 4.9e-76 281.6
Cam10g1389 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cam08g1494 . 6 380 MRS2 Gene Family AT1G80900 54.2 6.8e-106 381.3
Cam01g1344 . 41 436 MRS2 Gene Family AT5G22830 71.5 3.0e-149 525.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41