Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1399 ATGAGGTTGTATGTGTATGTATTGGAGGCCAAGGACCTCCATGTGAAGGACTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGGATTATGAGAAATAGCCCAAATCCTATTTGGAATGAGGAGTTCATTTTCAAGTTTCGTGATGTTGATGATGAACTAGTTGTGTCTATTTATGAGCACAGTGATGAATCCAACTTCTTCCATGCCTCATCTGGTTTGATTGGTCGGGTTCGGATACCCATATGGACCGTTGCTGCTGAGGATTCACAGACCTTGCGACCGACTTGGTTTGATATACGAAGGTCCAAAACCGAGAAATTCATCAATGAAGTTGCCGGGAAAGTGCTTCTTATTGTCTCATTACATGGAAAAGGCAATGTACTCAATCAATCAAGTGTTACTAATACTAATCCTAAACCATTGGAAGACTCATCTGGAACTTCGCAGGATTTGATTGGTGCCAAATCTTCATCCAACAAAGCTATCAAATGGAAGCCTAACAAGAAGACTATAGTGAGTCGTTTGGAGAGGTTGTTCCATAAGAGTGATGAGGATACAAGAACAGATAATTCTTCAGAGTCATCAAGTGACATGTCTGATACTGAAGAGCGCGTAAATGGGGATCCCTCTGAATCTACCTTTGATGAAGCTATTGAGGTACTGCAGTCAAGAAGCAATGAACAGGAAATGCCAGAAAACCTATCCGGTGGCATTCTTGTCGATCAGATGTATGTAGTTTCACCAGATGATATGAACAAACTTCTCTTTTCCCCAGATTCACAGTTCAGGAGAGAACTAGCAGAACATCAGGGAATAACAAATTTAGAAGAGGGAACTTGGTCTTGGAAACAAGGGGATGTACCTTGTCTATCACGGATTGTGTCTTATAAAAAACCCGCAACAAAGATTGTTGGAGCTATTAATGCTACGGAGGAGCAAACTTACATTAAAGGGGATGGATGGGAATTTGCTGTCTTAGTAAATGTAAGTACACCTGAGGTTCCATTTGGTAATGCATTCAATGTTGAGTTACTTTACAAGATAATGCCTGGCCCTGAGCTAATTTCTGGAGAAGAGACTTCTCAATTTGTAGTTTCTTGGGGTATAAACTTCCTCCATAGTACAATGATGAAAGGCATGATTGAGAAAGGGGCTCGACAGGGACTGGAGGAAAATTTTGTCCAGTTCACTAACTTGCTGTCTCAACATCTTAAAATTCCAAATTCTACTGAGCTATCGAACAAGGATCATGTGTTGTCAACTTCTGAGAATGACCGCCATTCAGATTTTGAATTGGCCAGCCAGTACTTCTGGAACTTTACTGTATTTTCTTCGATGTTCTTCCTGCTATACGTTCTTGTGCATATCATTCTTTCTAAGCCAAAAACAAAGCAAGGCTTGGAGTTCACTGGTATGGATCTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAGCGCGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAAGTGACCATGGGGTCAAAGGCCAAGGAGATGGATGGATCCTAACCATAGCTCTTATAGAAGGAGTGAACATTTCATCCTTGGATTCTTCCGGATCCTCCGACCCTTGTGTAGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCCGTTGAGCTTCAAACTCATGAGCCTCAATGGAATGAGGTACTCGAGTTCGATGCCATGAAGGAACCACCATCAGTTTTATATGTGGAGGTCTTTGACTTTGATGGTCCATTTGACCAGGCTACTTCACTTGGGCATGCAGAGATTAATTTCCTAAAATATAAATCAACTGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAGTCTTCTCAGTCGAAGCTACACTTGAGAATCTTCTTAGATAATACAGATGGAGTGGAAACAATAAGACAATATTTGTCCATGAAGGGAAAGGAGGTTGGGAAGAAGCTGCATCCTAGGTCACCTTACCGGAACTCGACATTTCAAAAGCTTTTTGGTTTTCCAGAAGACGAGTTTCTTGTCAGCGAGTTCACGTGCTCCTTGAAAAGAAAAATGCTTCTCCAGGGGAGATTATTTCTATCTGCCAGAGTCATTGGGTTTTATGGCAATTTCTTTGGACAAAAAACAAAATTTTTCTTTCTCTGGGAGGACATTGAAGATATACAACTACTCCACCCTTCCCTTTCCTCTCTGGGTAGCCCATCATTAGTCATTATTCTTAAAAAAGGTCGAGGGGTTGACGCAAGTCACGGTGCGAAGTCTCAAGATGAACAGGGCAGGCTCAGATTTTACCTCCAATCATTTGTCTCATTCAATGTAGCCAGCAGGACGATTATGGGTATGTGGAGAACAAGAAAATCAGTCCTTAATCAGAAAGCACAAGTAGCTGAACCGTTGAATAATTCCGAAGAAAGGTAA 2475 41.54 MRLYVYVLEAKDLHVKDSFVKLRVGRRKAKTRIMRNSPNPIWNEEFIFKFRDVDDELVVSIYEHSDESNFFHASSGLIGRVRIPIWTVAAEDSQTLRPTWFDIRRSKTEKFINEVAGKVLLIVSLHGKGNVLNQSSVTNTNPKPLEDSSGTSQDLIGAKSSSNKAIKWKPNKKTIVSRLERLFHKSDEDTRTDNSSESSSDMSDTEERVNGDPSESTFDEAIEVLQSRSNEQEMPENLSGGILVDQMYVVSPDDMNKLLFSPDSQFRRELAEHQGITNLEEGTWSWKQGDVPCLSRIVSYKKPATKIVGAINATEEQTYIKGDGWEFAVLVNVSTPEVPFGNAFNVELLYKIMPGPELISGEETSQFVVSWGINFLHSTMMKGMIEKGARQGLEENFVQFTNLLSQHLKIPNSTELSNKDHVLSTSENDRHSDFELASQYFWNFTVFSSMFFLLYVLVHIILSKPKTKQGLEFTGMDLPDSLGELVTSGILVLQLERVYNMVSHFIQARLKRGSDHGVKGQGDGWILTIALIEGVNISSLDSSGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEVLEFDAMKEPPSVLYVEVFDFDGPFDQATSLGHAEINFLKYKSTELADIWVPLEGKLAQSSQSKLHLRIFLDNTDGVETIRQYLSMKGKEVGKKLHPRSPYRNSTFQKLFGFPEDEFLVSEFTCSLKRKMLLQGRLFLSARVIGFYGNFFGQKTKFFFLWEDIEDIQLLHPSLSSLGSPSLVIILKKGRGVDASHGAKSQDEQGRLRFYLQSFVSFNVASRTIMGMWRTRKSVLNQKAQVAEPLNNSEER 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27543794 27547677 - CaPI482276_01g013990.1 Cam01g1399 118481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1399 824 Gene3D C2 domain 1 126 IPR035892 -
Cam01g1399 824 PANTHER BNAA05G37250D PROTEIN 1 816 IPR044511 -
Cam01g1399 824 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Cam01g1399 824 Gene3D C2 domain 511 645 IPR035892 -
Cam01g1399 824 Gene3D - 676 803 IPR011993 -
Cam01g1399 824 MobiDBLite consensus disorder prediction 132 163 - -
Cam01g1399 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 525 649 IPR035892 -
Cam01g1399 824 SMART C2_3c 526 624 IPR000008 -
Cam01g1399 824 SMART C2_3c 2 97 IPR000008 -
Cam01g1399 824 Pfam VAD1 Analog of StAR-related lipid transfer domain 243 392 IPR031968 -
Cam01g1399 824 SMART gram2001c 678 744 IPR004182 -
Cam01g1399 824 MobiDBLite consensus disorder prediction 186 217 - -
Cam01g1399 824 CDD C2 527 627 - -
Cam01g1399 824 MobiDBLite consensus disorder prediction 186 214 - -
Cam01g1399 824 Pfam GRAM domain 679 751 IPR004182 -
Cam01g1399 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 135 IPR035892 -
Cam01g1399 824 ProSiteProfiles VASt domain profile. 239 412 IPR031968 -
Cam01g1399 824 ProSiteProfiles C2 domain profile. 507 625 IPR000008 -
Cam01g1399 824 Pfam C2 domain 2 102 IPR000008 -
Cam01g1399 824 Pfam C2 domain 526 627 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1399 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1178 Cam-Chr1:18704007 Cam01g1399 Cam-Chr1:27543794 9.20E-223 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30