Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1406 ATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGCTCGCCTATGAAGCCGAGGCAAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATAACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 498 40.36 MGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNNNNHDITNSSMYFNGGI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27604745 27605242 + CaPI482276_01g014060.1 Cam01g1406 118488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1406 165 Coils Coil 92 112 - -
Cam01g1406 165 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cam01g1406 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 118 - -
Cam01g1406 165 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1406 Cam-Chr1:27604745 Cam11g1136 Cam-Chr11:22193914 9.70E-42 dispersed
Cam01g1406 Cam-Chr1:27604745 Cam10g1288 Cam-Chr10:26329080 3.70E-49 wgd
Cam01g1406 Cam-Chr1:27604745 Cam06g1875 Cam-Chr6:29809294 6.10E-52 wgd
Cam01g1406 Cam-Chr1:27604745 Cam09g1974 Cam-Chr9:34402756 1.50E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51265 PF03195 LOB 4.40E-42 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1406 - - - 0.0